RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 FAM223BA6NKX1 122 aa10.91□□□□□ -0.66
SHROOM1-208ENST00000617339 FAM159AQ6UWV7 190 aa10.91□□□□□ -0.66
SHROOM1-208ENST00000617339 FAM223AQ8IWN6 122 aa10.91□□□□□ -0.66
SHROOM1-208ENST00000617339 USMG5Q96IX5 58 aa10.91□□□□□ -0.66
SHROOM1-208ENST00000617339 JPT2Q9H910 190 aa10.91□□□□□ -0.66
SHROOM1-208ENST00000617339 PF4P02776 101 aa10.9□□□□□ -0.66
SHROOM1-208ENST00000617339 LGALS1P09382 135 aaKnown RBP10.9□□□□□ -0.66
SHROOM1-208ENST00000617339 CD7P09564 240 aa10.9□□□□□ -0.66
SHROOM1-208ENST00000617339 Q1RN00 199 aa10.9□□□□□ -0.66
SHROOM1-208ENST00000617339 CARD19Q96LW7 228 aa10.9□□□□□ -0.67
SHROOM1-208ENST00000617339 PRADC1Q9BSG0 188 aa10.9□□□□□ -0.67
SHROOM1-208ENST00000617339 KLK9Q9UKQ9 250 aa10.9□□□□□ -0.67
SHROOM1-208ENST00000617339 A0A087WWL8 130 aa10.89□□□□□ -0.67
SHROOM1-208ENST00000617339 TSPAN13O95857 204 aa10.89□□□□□ -0.67
SHROOM1-208ENST00000617339 TAL2Q16559 108 aa10.89□□□□□ -0.67
SHROOM1-208ENST00000617339 CITED1Q99966 193 aa10.89□□□□□ -0.67
SHROOM1-208ENST00000617339 MAST4O15021 2626 aa10.89□□□□□ -0.67
SHROOM1-208ENST00000617339 SPINK13Q1W4C9 94 aa10.89□□□□□ -0.67
SHROOM1-208ENST00000617339 H7C1H1 209 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 DEFB131AP59861 70 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 PLA2G2AP14555 144 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 PLNP26678 52 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 ZFAND6Q6FIF0 208 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 GPHB5Q86YW7 130 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 IGHV3-73A0A0B4J1V6 119 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 ZNF575Q86XF7 245 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 UBE2E2Q96LR5 201 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 ERG28Q9UKR5 140 aa10.88□□□□□ -0.67
SHROOM1-208ENST00000617339 F8VRH5 84 aa10.87□□□□□ -0.67
SHROOM1-208ENST00000617339 HOXD3P31249 432 aaPredicted RBP10.87□□□□□ -0.67
SHROOM1-208ENST00000617339 IGHV4OR15-8A0A075B7B6 117 aa10.87□□□□□ -0.67
SHROOM1-208ENST00000617339 A0A087WW49 117 aa10.87□□□□□ -0.67
SHROOM1-208ENST00000617339 NDUFA4O00483 81 aa10.87□□□□□ -0.67
SHROOM1-208ENST00000617339 PPDPFLQ8WWR9 84 aa10.87□□□□□ -0.67
SHROOM1-208ENST00000617339 IGHV7-4-1A0A0J9YVY3 117 aa10.86□□□□□ -0.67
SHROOM1-208ENST00000617339 TCL1BO95988 128 aa10.86□□□□□ -0.67
SHROOM1-208ENST00000617339 KNCNA6PVL3 124 aa10.86□□□□□ -0.67
SHROOM1-208ENST00000617339 SNCGO76070 127 aa10.86□□□□□ -0.67
SHROOM1-208ENST00000617339 RAX2Q96IS3 184 aa10.86□□□□□ -0.67
SHROOM1-208ENST00000617339 IGLV2-18A0A075B6J9 118 aa10.86□□□□□ -0.67
SHROOM1-208ENST00000617339 ANKRD29Q8N6D5 301 aa10.86□□□□□ -0.67
SHROOM1-208ENST00000617339 J3QLI3 93 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 RPL39LQ96EH5 51 aaKnown RBP10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 A8MWV9 139 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 TMEM190Q8WZ59 177 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 A6NJY4 79 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 GAGE2BQ13066 116 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 GAGE2EQ4V326 116 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 SHISA2Q6UWI4 295 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 GAGE2DQ9UEU5 116 aa10.85□□□□□ -0.67
SHROOM1-208ENST00000617339 C9orf139Q6ZV77 190 aa10.84□□□□□ -0.67
SHROOM1-208ENST00000617339 NRACQ8N912 160 aa10.84□□□□□ -0.67
SHROOM1-208ENST00000617339 GAGE5Q13069 117 aa10.84□□□□□ -0.67
SHROOM1-208ENST00000617339 GAGE6Q13070 117 aa10.84□□□□□ -0.67
SHROOM1-208ENST00000617339 TEN1Q86WV5 123 aa10.84□□□□□ -0.67
SHROOM1-208ENST00000617339 MGAM2Q2M2H8 2515 aa10.84□□□□□ -0.67
SHROOM1-208ENST00000617339 ZNF56Q15929 161 aa10.84□□□□□ -0.67
SHROOM1-208ENST00000617339 RPL35AP18077 110 aaKnown RBP10.83□□□□□ -0.68
SHROOM1-208ENST00000617339 C9JAW5 83 aa10.83□□□□□ -0.68
SHROOM1-208ENST00000617339 ASIPP42127 132 aa10.83□□□□□ -0.68
SHROOM1-208ENST00000617339 APRG1Q8IVJ8 170 aa10.82□□□□□ -0.68
SHROOM1-208ENST00000617339 TRPT1Q86TN4 253 aaKnown RBP10.82□□□□□ -0.68
SHROOM1-208ENST00000617339 LINC01587Q99440 93 aa10.82□□□□□ -0.68
SHROOM1-208ENST00000617339 SMIM2Q9BVW6 85 aa10.82□□□□□ -0.68
SHROOM1-208ENST00000617339 XCL2Q9UBD3 114 aa10.82□□□□□ -0.68
SHROOM1-208ENST00000617339 ZNF256Q9Y2P7 627 aaPredicted RBP10.82□□□□□ -0.68
SHROOM1-208ENST00000617339 ZFAND2AQ8N6M9 145 aa10.81□□□□□ -0.68
SHROOM1-208ENST00000617339 TRAV21A0A0B4J279 112 aa10.81□□□□□ -0.68
SHROOM1-208ENST00000617339 C2orf66Q6UXQ4 117 aa10.81□□□□□ -0.68
SHROOM1-208ENST00000617339 ATP6V0E2Q8NHE4 81 aa10.81□□□□□ -0.68
SHROOM1-208ENST00000617339 IGHV3-64A0A075B6Q5 118 aa10.81□□□□□ -0.68
SHROOM1-208ENST00000617339 CRIP2P52943 208 aaPredicted RBP10.81□□□□□ -0.68
SHROOM1-208ENST00000617339 U3KQE9 123 aa10.81□□□□□ -0.68
SHROOM1-208ENST00000617339 CCDC179H3BU77 68 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 IGLV1-40P01703 118 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 TMEM170BQ5T4T1 132 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 DNAJC9-AS1A6NH13 148 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 PSMB8P28062 276 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 C9orf47Q6ZRZ4 202 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 BAALCQ8WXS3 180 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 RASL10AQ92737 203 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 PEMTQ9UBM1 199 aa10.8□□□□□ -0.68
SHROOM1-208ENST00000617339 LINC01559Q495D7 138 aa10.79□□□□□ -0.68
SHROOM1-208ENST00000617339 NDUFA11Q86Y39 141 aa10.79□□□□□ -0.68
SHROOM1-208ENST00000617339 MDFICQ9P1T7 246 aa10.79□□□□□ -0.68
SHROOM1-208ENST00000617339 LINC01546A6NGU7 62 aa10.79□□□□□ -0.68
SHROOM1-208ENST00000617339 C19orf54Q5BKX5 351 aa10.79□□□□□ -0.68
SHROOM1-208ENST00000617339 TRAV4A0A0B4J268 109 aa10.79□□□□□ -0.68
SHROOM1-208ENST00000617339 CRLF1O75462 422 aa10.79□□□□□ -0.68
SHROOM1-208ENST00000617339 OVOL1O14753 267 aa10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 CNFNQ9BYD5 112 aa10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 DUSP14O95147 198 aaKnown RBP10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 IGHV3-53P01767 116 aa10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 CITED2Q99967 270 aaPredicted RBP10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 INAFM1C9JVW0 142 aa10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 LINC01619G3V211 115 aa10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 SUMO2P61956 95 aaKnown RBP10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 LYRM7Q5U5X0 104 aa10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 NEXN-AS1Q8NBZ9 246 aa10.78□□□□□ -0.68
SHROOM1-208ENST00000617339 SLC25A20O43772 301 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms