RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 XCL1P47992 114 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 ZNF134P52741 427 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 TIRAPP58753 221 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 XCL2Q9UBD3 114 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 A0A0J9YX75 114 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 PLAC8L1A1L4L8 177 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 IGKV1-16P04430 117 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 CLEC19AQ6UXS0 136 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 PRR15LQ9BU68 103 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV3OR16-13A0A075B7E8 117 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV3-74A0A0B4J1X5 117 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 CCL21O00585 134 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 GP9P14770 177 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 ANKRD17O75179 2603 aaKnown RBP3.83□□□□□ -1.8
VPS13D-213ENST00000613099 C15orf65H3BRN8 121 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 SRRM5B3KS81 715 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 TFF1P04155 84 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 FAM19A3Q7Z5A8 133 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 NOTCH4Q99466 2003 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 SND1-IT1Q9HBX3 110 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 GATA1P15976 413 aaPredicted RBP3.83□□□□□ -1.8
VPS13D-213ENST00000613099 GNLYP22749 145 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV3-30-3P0DP02 117 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 TRBV27A0A0K0K1C4 114 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 CD59P13987 128 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 LINC00311Q8N616 119 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 FDCSPQ8NFU4 85 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 FLVCR1-AS1Q8TAF5 88 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 SNURFQ9Y675 71 aa3.83□□□□□ -1.8
VPS13D-213ENST00000613099 C15orf32Q32M92 178 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 SP5Q6BEB4 398 aaPredicted RBP3.82□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV1OR15-1A0A075B7D0 117 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV3-35A0A0C4DH35 117 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 TRGV3P03979 118 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 GCN1Q92616 2671 aaKnown RBP3.82□□□□□ -1.8
VPS13D-213ENST00000613099 PLA2G2FQ9BZM2 168 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 Q6ZSR3 168 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 RNASE6Q93091 150 aaKnown RBP3.82□□□□□ -1.8
VPS13D-213ENST00000613099 COX7B2Q8TF08 81 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV3OR16-8A0A075B7F1 116 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 ZNF80P51504 273 aaPredicted RBP3.82□□□□□ -1.8
VPS13D-213ENST00000613099 TMEM92Q6UXU6 159 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV3-23P01764 117 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 CLPSP04118 112 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 WT1-ASQ06250 92 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 SS18Q15532 418 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 ZNF833PQ6ZTB9 187 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 CD177Q8N6Q3 437 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 ZNF22P17026 224 aaPredicted RBP3.82□□□□□ -1.8
VPS13D-213ENST00000613099 SBSPONQ8IVN8 264 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 UBE2E2Q96LR5 201 aa3.82□□□□□ -1.8
VPS13D-213ENST00000613099 TRBV10-3A0A0K0K1G6 114 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 EFNA2O43921 213 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 BPY2O14599 106 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 MED14OSP0DP75 135 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 CCL4P13236 92 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 C10orf55Q5SWW7 151 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 ODF3L1Q8IXM7 274 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 TTTY12Q9BZ98 90 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 COL8A2P25067 703 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 ESRGQ1W209 222 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 RSPO1Q2MKA7 263 aaPredicted RBP3.81□□□□□ -1.8
VPS13D-213ENST00000613099 ESM1Q9NQ30 184 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 TEX22C9J3V5 150 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 LECT2O14960 151 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 NHLRC4P0CG21 123 aaPredicted RBP3.81□□□□□ -1.8
VPS13D-213ENST00000613099 KRTAP27-1Q3LI81 207 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 EPG5Q9HCE0 2579 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 A0A0G2JNJ9 132 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 Q9UFV3 132 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 POLQO75417 2590 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 LINC00205P59089 165 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 ADORA2A-AS1P86434 159 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 LIMD2Q9BT23 127 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 EP400Q96L91 3159 aa3.81□□□□□ -1.8
VPS13D-213ENST00000613099 CD164L2Q6UWJ8 174 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 C17orf100A8MU93 164 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 PIP4P1Q86T03 277 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 IGLV2-14P01704 120 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 EDN2P20800 178 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 BEAN1Q3B7T3 259 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 DSCAMO60469 2012 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 NRACQ8N912 160 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 IGHV5-10-1A0A0J9YXX1 117 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 RPL39LQ96EH5 51 aaKnown RBP3.8□□□□□ -1.8
VPS13D-213ENST00000613099 CCKP06307 115 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 A0A0J9YXV3 536 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 ZNF295-AS1Q8N0V1 137 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 S4R3C0 116 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 C4orf48Q5BLP8 95 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 Q9HAA7 133 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 NSUN5P1Q3KNT7 163 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 PRRC2CQ9Y520 2896 aaKnown RBP3.8□□□□□ -1.8
VPS13D-213ENST00000613099 TRGV2A0A075B6R0 118 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 BUB1B-PAK6H3BSN5 160 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 NDUFA4O00483 81 aa3.8□□□□□ -1.8
VPS13D-213ENST00000613099 LINC00322Q6ZN03 302 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-213ENST00000613099 SPRNQ5BIV9 151 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 FAM19A4Q96LR4 140 aa3.79□□□□□ -1.8
VPS13D-213ENST00000613099 SETD2Q9BYW2 2564 aaPredicted RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms