RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 FAM222AQ5U5X8 452 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 CFAP126Q5VTH2 177 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 POM121L12Q8N7R1 296 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BHQ93079 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BNQ99877 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BMQ99879 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 CELA1Q9UNI1 258 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 PCLOQ9Y6V0 5065 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 A0A1B0GVY2 172 aa8.92□□□□□ -0.98
UPF1-208ENST00000600012 DEFB130BP0DP73 79 aa8.92□□□□□ -0.98
UPF1-208ENST00000600012 DEFB130AP0DP74 79 aa8.92□□□□□ -0.98
UPF1-208ENST00000600012 GATA1P15976 413 aaPredicted RBP8.92□□□□□ -0.98
UPF1-208ENST00000600012 C12orf74Q32Q52 190 aa8.92□□□□□ -0.98
UPF1-208ENST00000600012 ALKBH7Q9BT30 221 aaPredicted RBP8.92□□□□□ -0.98
UPF1-208ENST00000600012 NDUFAF3Q9BU61 184 aa8.92□□□□□ -0.98
UPF1-208ENST00000600012 TRGV2A0A075B6R0 118 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 TRAV4A0A0B4J268 109 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 LYRM9A8MSI8 78 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 F5H697 171 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 CKS2P33552 79 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 SUMO4Q6EEV6 95 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 UFSP1Q6NVU6 142 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 ORMDL3Q8N138 153 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 LINC00612Q8N6U2 182 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 OR4C5Q8NGB2 326 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 ZNF479Q96JC4 524 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 PRELID3AQ96N28 172 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 DKK2Q9UBU2 259 aa8.91□□□□□ -0.98
UPF1-208ENST00000600012 IQCJQ1A5X6 159 aa8.9□□□□□ -0.98
UPF1-208ENST00000600012 MRAP2Q96G30 205 aa8.9□□□□□ -0.98
UPF1-208ENST00000600012 PRSS29PA6NIE9 313 aa8.89□□□□□ -0.99
UPF1-208ENST00000600012 RHODO00212 210 aa8.89□□□□□ -0.99
UPF1-208ENST00000600012 NPYP01303 97 aa8.89□□□□□ -0.99
UPF1-208ENST00000600012 Q6ZSN1 163 aa8.89□□□□□ -0.99
UPF1-208ENST00000600012 C18orf32Q8TCD1 76 aa8.89□□□□□ -0.99
UPF1-208ENST00000600012 RPL39LQ96EH5 51 aaKnown RBP8.89□□□□□ -0.99
UPF1-208ENST00000600012 RTL8CO15255 209 aa8.88□□□□□ -0.99
UPF1-208ENST00000600012 PPBPP02775 128 aa8.88□□□□□ -0.99
UPF1-208ENST00000600012 SPART-AS1P0CW21 52 aa8.88□□□□□ -0.99
UPF1-208ENST00000600012 NDUFA6P56556 154 aa8.88□□□□□ -0.99
UPF1-208ENST00000600012 DAD1P61803 113 aa8.88□□□□□ -0.99
UPF1-208ENST00000600012 NRACQ8N912 160 aa8.88□□□□□ -0.99
UPF1-208ENST00000600012 PKHD1P08F94 4074 aa8.87□□□□□ -0.99
UPF1-208ENST00000600012 TEX48A0A1B0GUV7 120 aa8.87□□□□□ -0.99
UPF1-208ENST00000600012 M0R2N4 97 aa8.87□□□□□ -0.99
UPF1-208ENST00000600012 TNFRSF6BO95407 300 aa8.87□□□□□ -0.99
UPF1-208ENST00000600012 OR10J3Q5JRS4 329 aa8.87□□□□□ -0.99
UPF1-208ENST00000600012 ZFP2Q6ZN57 461 aa8.87□□□□□ -0.99
UPF1-208ENST00000600012 LOC389332A0A1B0GUA5 103 aa8.86□□□□□ -0.99
UPF1-208ENST00000600012 M0QY20 66 aa8.86□□□□□ -0.99
UPF1-208ENST00000600012 UBE2DNLQ8IWF7 75 aa8.86□□□□□ -0.99
UPF1-208ENST00000600012 C18orf15Q96N68 181 aa8.86□□□□□ -0.99
UPF1-208ENST00000600012 FAT2Q9NYQ8 4349 aa8.86□□□□□ -0.99
UPF1-208ENST00000600012 TRGV4A0A0C4DH28 118 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 S100A6P06703 90 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 LINC00310P59036 64 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 Q0VG73 95 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 FHL2Q14192 279 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 BAGE3Q86Y29 109 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 MAP1LC3AQ9H492 121 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 LAMTOR2Q9Y2Q5 125 aa8.85□□□□□ -0.99
UPF1-208ENST00000600012 DNAH2Q9P225 4427 aa8.84□□□□□ -0.99
UPF1-208ENST00000600012 DNAH17Q9UFH2 4485 aa8.84□□□□□ -0.99
UPF1-208ENST00000600012 H7C1H1 209 aa8.84□□□□□ -0.99
UPF1-208ENST00000600012 K7EQD1 137 aa8.84□□□□□ -0.99
UPF1-208ENST00000600012 HOXA5P20719 270 aa8.84□□□□□ -0.99
UPF1-208ENST00000600012 URB1-AS1Q96HZ7 61 aa8.84□□□□□ -0.99
UPF1-208ENST00000600012 Q9UF83 564 aa8.84□□□□□ -0.99
UPF1-208ENST00000600012 CIDEAO60543 219 aa8.83□□□□□ -1
UPF1-208ENST00000600012 SERF1AO75920 110 aa8.83□□□□□ -1
UPF1-208ENST00000600012 HTN3P15516 51 aa8.83□□□□□ -1
UPF1-208ENST00000600012 IFI27P40305 119 aaPredicted RBP8.83□□□□□ -1
UPF1-208ENST00000600012 RNASEKQ6P5S7 137 aaKnown RBP8.83□□□□□ -1
UPF1-208ENST00000600012 Q6ZR54 194 aa8.83□□□□□ -1
UPF1-208ENST00000600012 NEGR1Q7Z3B1 354 aa8.83□□□□□ -1
UPF1-208ENST00000600012 SLC25A29Q8N8R3 303 aa8.83□□□□□ -1
UPF1-208ENST00000600012 NEXN-AS1Q8NBZ9 246 aa8.83□□□□□ -1
UPF1-208ENST00000600012 NIT2Q9NQR4 276 aa8.83□□□□□ -1
UPF1-208ENST00000600012 IGLV2-18A0A075B6J9 118 aa8.82□□□□□ -1
UPF1-208ENST00000600012 TRBV6-5A0A0K0K1A5 114 aa8.82□□□□□ -1
UPF1-208ENST00000600012 NUPR1O60356 82 aa8.82□□□□□ -1
UPF1-208ENST00000600012 ATP5G1P05496 136 aa8.82□□□□□ -1
UPF1-208ENST00000600012 SUMO2P61956 95 aaKnown RBP8.82□□□□□ -1
UPF1-208ENST00000600012 SNRPEP62304 92 aaKnown RBP8.82□□□□□ -1
UPF1-208ENST00000600012 COA6Q5JTJ3 125 aaKnown RBP8.82□□□□□ -1
UPF1-208ENST00000600012 NIT1Q86X76 327 aa8.82□□□□□ -1
UPF1-208ENST00000600012 PRSS3P2Q8NHM4 247 aa8.82□□□□□ -1
UPF1-208ENST00000600012 SMIM2Q9BVW6 85 aa8.82□□□□□ -1
UPF1-208ENST00000600012 ST20Q9HBF5 79 aa8.82□□□□□ -1
UPF1-208ENST00000600012 RYR1P21817 5038 aa8.82□□□□□ -1
UPF1-208ENST00000600012 LOC100131303A0A0U1RQF7 123 aa8.81□□□□□ -1
UPF1-208ENST00000600012 SDHAF1A6NFY7 115 aa8.81□□□□□ -1
UPF1-208ENST00000600012 F5H768 121 aa8.81□□□□□ -1
UPF1-208ENST00000600012 PPP1R17O96001 155 aa8.81□□□□□ -1
UPF1-208ENST00000600012 PDZD11Q5EBL8 140 aa8.81□□□□□ -1
UPF1-208ENST00000600012 FA2HQ7L5A8 372 aa8.81□□□□□ -1
UPF1-208ENST00000600012 C20orf78Q9BR46 151 aa8.81□□□□□ -1
UPF1-208ENST00000600012 TMEM70Q9BUB7 260 aa8.81□□□□□ -1
UPF1-208ENST00000600012 DNAH11Q96DT5 4516 aa8.81□□□□□ -1
UPF1-208ENST00000600012 TRBV6-4A0A1B0GX49 114 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms