RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 IMMP2LQ96T52 175 aa7.05□□□□□ -1.28
LIG1-213ENST00000596672 HIST1H2BNQ99877 126 aa7.05□□□□□ -1.28
LIG1-213ENST00000596672 HIST1H2BMQ99879 126 aa7.05□□□□□ -1.28
LIG1-213ENST00000596672 V9GYV3 84 aa7.05□□□□□ -1.28
LIG1-213ENST00000596672 A0A087WTM6 91 aa7.04□□□□□ -1.28
LIG1-213ENST00000596672 TRGC2P03986 189 aa7.04□□□□□ -1.28
LIG1-213ENST00000596672 PFN1P07737 140 aaKnown RBP7.04□□□□□ -1.28
LIG1-213ENST00000596672 SRIP30626 198 aa7.04□□□□□ -1.28
LIG1-213ENST00000596672 ZNF876PQ49A33 203 aa7.04□□□□□ -1.28
LIG1-213ENST00000596672 Q8N1X5 172 aa7.04□□□□□ -1.28
LIG1-213ENST00000596672 NDFIP1Q9BT67 221 aa7.04□□□□□ -1.28
LIG1-213ENST00000596672 SAMD10Q9BYL1 202 aa7.04□□□□□ -1.28
LIG1-213ENST00000596672 DMBT1Q9UGM3 2413 aaPredicted RBP7.03□□□□□ -1.28
LIG1-213ENST00000596672 C19orf71A6NCJ1 209 aa7.03□□□□□ -1.28
LIG1-213ENST00000596672 TRGC1P0CF51 173 aa7.03□□□□□ -1.28
LIG1-213ENST00000596672 LINC00694P0DN24 101 aa7.03□□□□□ -1.28
LIG1-213ENST00000596672 UFSP1Q6NVU6 142 aa7.03□□□□□ -1.28
LIG1-213ENST00000596672 FAM231DQ6ZW35 169 aa7.03□□□□□ -1.28
LIG1-213ENST00000596672 HIST3H2BBQ8N257 126 aa7.03□□□□□ -1.28
LIG1-213ENST00000596672 IL36BQ9NZH7 164 aa7.03□□□□□ -1.28
LIG1-213ENST00000596672 TRAV9-1A0A075B6T8 112 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 LRCOL1A6NCL2 159 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 LINC00587B1AMM8 73 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 TSTD3H0UI37 97 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 SH2D1AO60880 128 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 P01737 135 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 ORM1P02763 201 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 RPL19P84098 196 aaKnown RBP7.02□□□□□ -1.29
LIG1-213ENST00000596672 WFDC2Q14508 124 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 COA6Q5JTJ3 125 aaKnown RBP7.02□□□□□ -1.29
LIG1-213ENST00000596672 OR10D4PQ8NGN7 298 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 FRZBQ92765 325 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 PTH2Q96A98 100 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 KCNS1Q96KK3 526 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 RPP21Q9H633 154 aaKnown RBP7.02□□□□□ -1.29
LIG1-213ENST00000596672 SCRT2Q9NQ03 307 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 MSRB1Q9NZV6 116 aa7.02□□□□□ -1.29
LIG1-213ENST00000596672 TIRAPP58753 221 aa7.01□□□□□ -1.29
LIG1-213ENST00000596672 PKIAP61925 76 aa7.01□□□□□ -1.29
LIG1-213ENST00000596672 FAM162BQ5T6X4 162 aa7.01□□□□□ -1.29
LIG1-213ENST00000596672 DMRTA1Q5VZB9 504 aa7.01□□□□□ -1.29
LIG1-213ENST00000596672 COX8CQ7Z4L0 72 aa7.01□□□□□ -1.29
LIG1-213ENST00000596672 C14orf178Q8N769 122 aaPredicted RBP7.01□□□□□ -1.29
LIG1-213ENST00000596672 OR2D3Q8NGH3 330 aa7.01□□□□□ -1.29
LIG1-213ENST00000596672 TMSB15BA0A087X1C1 80 aa7□□□□□ -1.29
LIG1-213ENST00000596672 TRBV6-4A0A1B0GX49 114 aa7□□□□□ -1.29
LIG1-213ENST00000596672 SMIM27A0A1W2PRY6 76 aa7□□□□□ -1.29
LIG1-213ENST00000596672 GRIFINA4D1Z8 144 aa7□□□□□ -1.29
LIG1-213ENST00000596672 FABP5P3A8MUU1 101 aa7□□□□□ -1.29
LIG1-213ENST00000596672 CRYGDP07320 174 aa7□□□□□ -1.29
LIG1-213ENST00000596672 GZMBP10144 247 aa7□□□□□ -1.29
LIG1-213ENST00000596672 HAMPP81172 84 aa7□□□□□ -1.29
LIG1-213ENST00000596672 PYY3Q5JQD4 70 aa7□□□□□ -1.29
LIG1-213ENST00000596672 DNAJC30Q96LL9 226 aa7□□□□□ -1.29
LIG1-213ENST00000596672 LRP1Q07954 4544 aaKnown RBP6.99□□□□□ -1.29
LIG1-213ENST00000596672 IFITM10A6NMD0 228 aa6.99□□□□□ -1.29
LIG1-213ENST00000596672 A8MWL6 223 aa6.99□□□□□ -1.29
LIG1-213ENST00000596672 PHOX2AO14813 284 aa6.99□□□□□ -1.29
LIG1-213ENST00000596672 LBHQ53QV2 105 aaPredicted RBP6.99□□□□□ -1.29
LIG1-213ENST00000596672 LINC01556Q5JQF7 62 aa6.99□□□□□ -1.29
LIG1-213ENST00000596672 TSKUQ8WUA8 353 aa6.99□□□□□ -1.29
LIG1-213ENST00000596672 TMEM18Q96B42 140 aa6.99□□□□□ -1.29
LIG1-213ENST00000596672 PACRGQ96M98 296 aaPredicted RBP6.99□□□□□ -1.29
LIG1-213ENST00000596672 IGHV3-38A0A0C4DH36 116 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 XKRY2A2RUG3 117 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 IBA57-AS1B1ANH7 110 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 H3BVH4 76 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 IGHV3-30P01768 117 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 IGHV3-33P01772 117 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 IGHV3-30-3P0DP02 117 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 IGHV3-30-5P0DP03 117 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 FABP4P15090 132 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 JOSD1Q15040 202 aaPredicted RBP6.98□□□□□ -1.29
LIG1-213ENST00000596672 COX19Q49B96 90 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 NUP35Q8NFH5 326 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 GTSF1Q8WW33 167 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 PGLYRP4Q96LB8 373 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 PGPEP1Q9NXJ5 209 aa6.98□□□□□ -1.29
LIG1-213ENST00000596672 GAGE12JA6NER3 117 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 HIGD1CA8MV81 97 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 ARMS2P0C7Q2 107 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 EVI2AP22794 236 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 GAGE1Q13065 139 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 GAGE4Q13068 117 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 GAGE5Q13069 117 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 RHOHQ15669 191 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 GAGE13Q4V321 117 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 CT83Q5H943 113 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 LELP1Q5T871 98 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 MRPL54Q6P161 138 aaKnown RBP6.97□□□□□ -1.29
LIG1-213ENST00000596672 HIST1H2BLQ99880 126 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 TPPP3Q9BW30 176 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 GTSF1LQ9H1H1 148 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 FAM30AQ9NZY2 134 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 NAT8BQ9UHF3 227 aa6.97□□□□□ -1.29
LIG1-213ENST00000596672 RPS20P60866 119 aaKnown RBP6.96□□□□□ -1.3
LIG1-213ENST00000596672 ZFP2Q6ZN57 461 aa6.96□□□□□ -1.3
LIG1-213ENST00000596672 NFE4Q86UQ8 179 aa6.96□□□□□ -1.3
LIG1-213ENST00000596672 ATP6V0E2Q8NHE4 81 aa6.96□□□□□ -1.3
LIG1-213ENST00000596672 Q9HAA7 133 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms