RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 ZNF843Q8N446 348 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 PRADC1Q9BSG0 188 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 ZNF256Q9Y2P7 627 aaPredicted RBP5.47□□□□□ -1.53
ZNF540-206ENST00000589117 IGSF10Q6WRI0 2623 aa5.46□□□□□ -1.53
ZNF540-206ENST00000589117 A8MWV9 139 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 DEFB131AP59861 70 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 NEGR1Q7Z3B1 354 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 Q96MF0 132 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 VPS25Q9BRG1 176 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 CELSR1Q9NYQ6 3014 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 VPS13CQ709C8 3753 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 CSPG4Q6UVK1 2322 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 C12orf74Q32Q52 190 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 TMEM170BQ5T4T1 132 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 AMTNQ6UX39 209 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 DUX3Q96PT4 197 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 MYO18BQ8IUG5 2567 aa5.46□□□□□ -1.54
ZNF540-206ENST00000589117 FLNCQ14315 2725 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 C11orf86A6NJI1 115 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 H3BMM0 161 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 M0R2P5 195 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 HTN1P15515 57 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 RBX1P62877 108 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 ZNF415Q09FC8 603 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 ZNF479Q96JC4 524 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 EDA2RQ9HAV5 297 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 TNFRSF18Q9Y5U5 241 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 USP9XQ93008 2570 aaPredicted RBP5.45□□□□□ -1.54
ZNF540-206ENST00000589117 RPL39P62891 51 aaKnown RBP5.45□□□□□ -1.54
ZNF540-206ENST00000589117 PTH2Q96A98 100 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 NAA38Q9BRA0 125 aaKnown RBP5.45□□□□□ -1.54
ZNF540-206ENST00000589117 VCX2Q9H322 139 aa5.45□□□□□ -1.54
ZNF540-206ENST00000589117 MAP1AP78559 2803 aaPredicted RBP5.45□□□□□ -1.54
ZNF540-206ENST00000589117 ACACBO00763 2458 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 ZFHX3Q15911 3703 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 TRBV7-3A0A075B6L6 115 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 KNCNA6PVL3 124 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 A8MTW9 85 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 F8W1H4 67 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 RHODO00212 210 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 CRYBA4P53673 196 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 LYRM7Q5U5X0 104 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 C20orf203Q8NBC4 194 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 KLHL30-AS1Q8NEE0 82 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 SPAG8Q99932 426 aaPredicted RBP5.44□□□□□ -1.54
ZNF540-206ENST00000589117 SPXQ9BT56 116 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 MUC4Q99102 2169 aa5.44□□□□□ -1.54
ZNF540-206ENST00000589117 A0A0A0MQY5 61 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 TRAV25A0A0B4J276 109 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 IGLL5B9A064 214 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 TSHBP01222 138 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 LGALS3P17931 250 aaKnown RBP5.43□□□□□ -1.54
ZNF540-206ENST00000589117 DEFB136Q30KP8 78 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 NFE4Q86UQ8 179 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 PHLDA1Q8WV24 401 aaPredicted RBP5.43□□□□□ -1.54
ZNF540-206ENST00000589117 LINC01587Q99440 93 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 ANKRD17O75179 2603 aaKnown RBP5.43□□□□□ -1.54
ZNF540-206ENST00000589117 IGLV4-69A0A075B6H9 119 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 A0A1B0GWB2 263 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 J3QR89 54 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 K7ERJ3 54 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 INSP01308 110 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 CMC4P56277 68 aaPredicted RBP5.43□□□□□ -1.54
ZNF540-206ENST00000589117 BEAN1Q3B7T3 259 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 SERTAD4-AS1Q5TG53 156 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 TMEM61Q8N0U2 210 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 BBC3Q96PG8 261 aaPredicted RBP5.43□□□□□ -1.54
ZNF540-206ENST00000589117 LINC00467Q9BRT7 94 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 PYGO1Q9Y3Y4 419 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 CELSR2Q9HCU4 2923 aa5.43□□□□□ -1.54
ZNF540-206ENST00000589117 KRTAP10-9P60411 292 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 RRN3P1Q2M238 152 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 DEFB114Q30KQ6 69 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 DLX4Q92988 240 aaPredicted RBP5.42□□□□□ -1.54
ZNF540-206ENST00000589117 DNAJC30Q96LL9 226 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 MRPL16Q9NX20 251 aaKnown RBP5.42□□□□□ -1.54
ZNF540-206ENST00000589117 J3QQQ9 107 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 EMP1P54849 157 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 Q6ZSN1 163 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 PLEKHB2Q96CS7 222 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 MAP6D1Q9H9H5 199 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 SPANXB1Q9NS25 103 aaPredicted RBP5.42□□□□□ -1.54
ZNF540-206ENST00000589117 CRYBG3Q68DQ2 2970 aa5.42□□□□□ -1.54
ZNF540-206ENST00000589117 A4D1N5 150 aa5.41□□□□□ -1.54
ZNF540-206ENST00000589117 MORN3Q6PF18 240 aaPredicted RBP5.41□□□□□ -1.54
ZNF540-206ENST00000589117 STHQ8IWL8 128 aa5.41□□□□□ -1.54
ZNF540-206ENST00000589117 USP9YO00507 2555 aaPredicted RBP5.41□□□□□ -1.54
ZNF540-206ENST00000589117 FAM208BQ5VWN6 2430 aa5.41□□□□□ -1.54
ZNF540-206ENST00000589117 LEPROTO15243 131 aa5.41□□□□□ -1.54
ZNF540-206ENST00000589117 RPL24P83731 157 aaKnown RBP5.41□□□□□ -1.54
ZNF540-206ENST00000589117 C18orf65Q6ZTR6 163 aa5.41□□□□□ -1.54
ZNF540-206ENST00000589117 SLC25A29Q8N8R3 303 aa5.41□□□□□ -1.54
ZNF540-206ENST00000589117 PRRC2AP48634 2157 aaKnown RBP5.4□□□□□ -1.54
ZNF540-206ENST00000589117 A0A0J9YY99 117 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 G3V4G9 280 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 P0DMU3 169 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 FAM231AP0DMU4 169 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 FAM231CP0DMU5 169 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 CD28P10747 220 aa5.4□□□□□ -1.54
ZNF540-206ENST00000589117 ZNRF2Q8NHG8 242 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms