RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 CHD9Q3L8U1 2897 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 TANC1Q9C0D5 1861 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 IFITM5A6NNB3 132 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 INE1O15225 51 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 HMGA1P17096 107 aaKnown RBP3.08□□□□□ -1.92
VMP1-208ENST00000588617 SPRNQ5BIV9 151 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 C3orf62Q6ZUJ4 267 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 RANBP2P49792 3224 aaKnown RBP3.08□□□□□ -1.92
VMP1-208ENST00000588617 CHD7Q9P2D1 2997 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 LAMA3Q16787 3333 aa3.08□□□□□ -1.92
VMP1-208ENST00000588617 SDK1Q7Z5N4 2213 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 IGKV2-40A0A087WW87 121 aaPredicted RBP3.07□□□□□ -1.92
VMP1-208ENST00000588617 LOC110117498A0A087WWA1 95 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 FAM236AA0A1B0GUQ0 79 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 FAM236BA0A1B0GV22 79 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 M0R2N4 97 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 IGKV2D-40P01614 121 aaPredicted RBP3.07□□□□□ -1.92
VMP1-208ENST00000588617 ZNF25P17030 456 aaPredicted RBP3.07□□□□□ -1.92
VMP1-208ENST00000588617 DNAJB13P59910 316 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 C5orf17Q8NAS9 161 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 OR10AC1Q8NH08 325 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 ERG28Q9UKR5 140 aa3.07□□□□□ -1.92
VMP1-208ENST00000588617 TRANK1O15050 2925 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 XIRP2A4UGR9 3374 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 IGKV3-7A0A075B6H7 116 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 TRBV6-7A0A0A0MS04 114 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 BBIP1A8MTZ0 92 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 NCR2O95944 276 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 RBP4P02753 201 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 GNGT1P63211 74 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 PATJQ8NI35 1801 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 TMEM14CQ9P0S9 112 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 CDH23Q9H251 3354 aa3.06□□□□□ -1.92
VMP1-208ENST00000588617 LOC285095A0A1B0GVY8 99 aa3.05□□□□□ -1.92
VMP1-208ENST00000588617 GEMIN2O14893 280 aaKnown RBP3.05□□□□□ -1.92
VMP1-208ENST00000588617 COPZ1P61923 177 aa3.05□□□□□ -1.92
VMP1-208ENST00000588617 LSM2Q9Y333 95 aaKnown RBP3.05□□□□□ -1.92
VMP1-208ENST00000588617 EXPH5Q8NEV8 1989 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 NPFFO15130 113 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 SULT1C4O75897 302 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 PPYP01298 95 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 IGHV3-33P01772 117 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 CCSMST1Q4G0I0 132 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 IZUMO2Q6UXV1 221 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 ZFP30Q9Y2G7 519 aa3.04□□□□□ -1.92
VMP1-208ENST00000588617 SZT2Q5T011 3432 aa3.03□□□□□ -1.92
VMP1-208ENST00000588617 PTPRDP23468 1912 aa3.03□□□□□ -1.92
VMP1-208ENST00000588617 A6NN06 94 aa3.03□□□□□ -1.92
VMP1-208ENST00000588617 K7EP13 123 aa3.03□□□□□ -1.92
VMP1-208ENST00000588617 PLGLB1Q02325 96 aa3.03□□□□□ -1.92
VMP1-208ENST00000588617 C4orf33Q8N1A6 199 aa3.03□□□□□ -1.92
VMP1-208ENST00000588617 TNRC6BQ9UPQ9 1833 aaKnown RBP3.03□□□□□ -1.93
VMP1-208ENST00000588617 SPTBN5Q9NRC6 3674 aaKnown RBP3.02□□□□□ -1.93
VMP1-208ENST00000588617 M0R129 80 aa3.02□□□□□ -1.93
VMP1-208ENST00000588617 YPEL1O60688 119 aa3.02□□□□□ -1.93
VMP1-208ENST00000588617 KLF7O75840 302 aaPredicted RBP3.02□□□□□ -1.93
VMP1-208ENST00000588617 LINC00322Q6ZN03 302 aaPredicted RBP3.02□□□□□ -1.93
VMP1-208ENST00000588617 TCTEX1D1Q8N7M0 179 aa3.02□□□□□ -1.93
VMP1-208ENST00000588617 MRPL57Q9BQC6 102 aaKnown RBP3.02□□□□□ -1.93
VMP1-208ENST00000588617 SAR1AQ9NR31 198 aa3.02□□□□□ -1.93
VMP1-208ENST00000588617 MUC4Q99102 2169 aa3.02□□□□□ -1.93
VMP1-208ENST00000588617 IGKV2-29A2NJV5 120 aaPredicted RBP3.01□□□□□ -1.93
VMP1-208ENST00000588617 JMJD7-PLA2G4BH0Y9G9 81 aa3.01□□□□□ -1.93
VMP1-208ENST00000588617 CDC42EP2O14613 210 aa3.01□□□□□ -1.93
VMP1-208ENST00000588617 IL9P15248 144 aa3.01□□□□□ -1.93
VMP1-208ENST00000588617 GDF5OSQ5U4N7 250 aa3.01□□□□□ -1.93
VMP1-208ENST00000588617 C10orf82Q8WW14 230 aa3.01□□□□□ -1.93
VMP1-208ENST00000588617 TET1Q8NFU7 2136 aa3.01□□□□□ -1.93
VMP1-208ENST00000588617 UNC13CQ8NB66 2214 aa3□□□□□ -1.93
VMP1-208ENST00000588617 UNC80Q8N2C7 3258 aa3□□□□□ -1.93
VMP1-208ENST00000588617 ALPK3Q96L96 1907 aa3□□□□□ -1.93
VMP1-208ENST00000588617 ZNF670-ZNF695F2Z2N8 137 aa3□□□□□ -1.93
VMP1-208ENST00000588617 OBSCN-AS1Q96MR7 158 aa3□□□□□ -1.93
VMP1-208ENST00000588617 TRBV20-1A0A075B6N2 111 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 IGLV3-32A0A0A0MS00 114 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 A0A0G2JND7 137 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 RPL13AP3Q6NVV1 102 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 SNX29P2Q8IUI4 249 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 DEFB119Q8N690 84 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 LIMD2Q9BT23 127 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 WFDC10AQ9H1F0 79 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 REV3LO60673 3130 aa2.99□□□□□ -1.93
VMP1-208ENST00000588617 EYSQ5T1H1 3165 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 A0A1W2PPB8 328 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 A0A1W2PRS3 328 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 KIR3DP1A8MWS1 328 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 TPST1O60507 370 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 SPINT3P49223 89 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 IDO2Q6ZQW0 420 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 LINC00299Q6ZSB3 139 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 ARL11Q969Q4 196 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 KIAA1549LQ6ZVL6 1849 aa2.98□□□□□ -1.93
VMP1-208ENST00000588617 KIAA0100Q14667 2235 aaKnown RBP2.97□□□□□ -1.93
VMP1-208ENST00000588617 PIRTP0C851 137 aa2.97□□□□□ -1.93
VMP1-208ENST00000588617 ADCYAP1P18509 176 aa2.97□□□□□ -1.93
VMP1-208ENST00000588617 PRO3102Q9H379 93 aa2.97□□□□□ -1.93
VMP1-208ENST00000588617 NOP16Q9Y3C1 178 aaKnown RBP2.97□□□□□ -1.93
VMP1-208ENST00000588617 C5orf42Q9H799 3197 aa2.96□□□□□ -1.94
VMP1-208ENST00000588617 TNRC18O15417 2968 aaPredicted RBP2.96□□□□□ -1.94
VMP1-208ENST00000588617 HELZP42694 1942 aaKnown RBP2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms