RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 DAZ2Q13117 558 aaKnown RBP7.55□□□□□ -1.2
SS18-217ENST00000580958 DEFB135Q30KP9 77 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 NDUFAF3Q9BU61 184 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 G3V4G9 280 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 RHODO00212 210 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 TCAPO15273 167 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 HBDP02042 147 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 LGALS9BQ3B8N2 356 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 Q6ZSN1 163 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 NEGR1Q7Z3B1 354 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 OR4C5Q8NGB2 326 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 OVOL2Q9BRP0 275 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 NIT2Q9NQR4 276 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 X6R8D5 127 aa7.54□□□□□ -1.2
SS18-217ENST00000580958 TRBV6-5A0A0K0K1A5 114 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 GAGE12BA1L429 117 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 H7C1H1 209 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 GAGE7O76087 117 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 GAGE12FP0CL80 117 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 GAGE12GP0CL81 117 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 GAGE12IP0CL82 117 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 P0DMU3 169 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 FAM231AP0DMU4 169 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 FAM231CP0DMU5 169 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 FCER1GP30273 86 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 POLR2KP53803 58 aaKnown RBP7.53□□□□□ -1.2
SS18-217ENST00000580958 EMP1P54849 157 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 RPL32P62910 135 aaKnown RBP7.53□□□□□ -1.2
SS18-217ENST00000580958 LAGE3Q14657 143 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 Q8N976 141 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 TMEM70Q9BUB7 260 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 EDA2RQ9HAV5 297 aa7.53□□□□□ -1.2
SS18-217ENST00000580958 ZMAT5Q9UDW3 170 aaKnown RBP7.53□□□□□ -1.2
SS18-217ENST00000580958 TRAV4A0A0B4J268 109 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 SDHAF1A6NFY7 115 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 SMIM9A6NGZ8 99 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 IGHV3-53P01767 116 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 ZFP2Q6ZN57 461 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 SPATA12Q7Z6I5 190 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 OR11H2Q8NH07 326 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 ZNF479Q96JC4 524 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 KRTAP9-2Q9BYQ4 174 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 HSPB8Q9UJY1 196 aa7.52□□□□□ -1.21
SS18-217ENST00000580958 VCYO14598 125 aa7.51□□□□□ -1.21
SS18-217ENST00000580958 NUDT3O95989 172 aa7.51□□□□□ -1.21
SS18-217ENST00000580958 BTF3P20290 206 aaKnown RBP7.51□□□□□ -1.21
SS18-217ENST00000580958 NBEAL2Q6ZNJ1 2754 aa7.51□□□□□ -1.21
SS18-217ENST00000580958 TRGV2A0A075B6R0 118 aa7.5□□□□□ -1.21
SS18-217ENST00000580958 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.5□□□□□ -1.21
SS18-217ENST00000580958 SYS1-DBNDD2H3BUS1 97 aa7.5□□□□□ -1.21
SS18-217ENST00000580958 ORMDL2Q53FV1 153 aa7.5□□□□□ -1.21
SS18-217ENST00000580958 NEXN-AS1Q8NBZ9 246 aa7.5□□□□□ -1.21
SS18-217ENST00000580958 DEFB104AQ8WTQ1 72 aa7.5□□□□□ -1.21
SS18-217ENST00000580958 RNF183Q96D59 192 aa7.5□□□□□ -1.21
SS18-217ENST00000580958 MAP1LC3CQ9BXW4 147 aa7.5□□□□□ -1.21
SS18-217ENST00000580958 IGHV4-28A0A0C4DH34 117 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 TRBV27A0A0K0K1C4 114 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 A8MZ25 164 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 H0Y8G0 127 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 K7EMI3 77 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 IFI27L1Q96BM0 104 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 C18orf15Q96N68 181 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 Q9UF83 564 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 TNFRSF18Q9Y5U5 241 aa7.49□□□□□ -1.21
SS18-217ENST00000580958 I3L3M4 83 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 K7EQD1 137 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 DEFB4AO15263 64 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 PET117Q6UWS5 81 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 LINC00612Q8N6U2 182 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 DNAJC30Q96LL9 226 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 KIR2DL4Q99706 377 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 NOTCH1P46531 2555 aa7.48□□□□□ -1.21
SS18-217ENST00000580958 C20orf202A1L168 122 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 TSHBP01222 138 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 DEFB130BP0DP73 79 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 DEFB130AP0DP74 79 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 MIFP14174 115 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 S100A12P80511 92 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 RHOHQ15669 191 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 FAM222AQ5U5X8 452 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 TEX43Q6ZNM6 134 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 Q8NAQ8 132 aa7.47□□□□□ -1.21
SS18-217ENST00000580958 TRGV4A0A0C4DH28 118 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 KRTAP9-6A0A140TA67 174 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 PCP4L1A6NKN8 68 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 LYRM9A8MSI8 78 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 CIDEAO60543 219 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 ATP5LO75964 103 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 GHRHP01286 108 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 PRB2P02812 416 aaPredicted RBP7.46□□□□□ -1.22
SS18-217ENST00000580958 RIPPLY3P57055 190 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 FHL2Q14192 279 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 C2orf66Q6UXQ4 117 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 ATOH7Q8N100 152 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 PHLDA1Q8WV24 401 aaPredicted RBP7.46□□□□□ -1.22
SS18-217ENST00000580958 TOMM6Q96B49 74 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 RETNQ9HD89 108 aa7.46□□□□□ -1.22
SS18-217ENST00000580958 IGHV3-38A0A0C4DH36 116 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 LINC01545Q5VT33 79 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 SLC25A29Q8N8R3 303 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms