RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 HIST1H2BBP33778 126 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 HIST1H2BDP58876 126 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 HIST1H2BCP62807 126 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 FHL2Q14192 279 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 HIST2H2BEQ16778 126 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.87□□□□□ -0.67
SS18-216ENST00000580751 FAM74A4Q5TZK3 123 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 HIST1H2BHQ93079 126 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 HIST1H2BNQ99877 126 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 HIST1H2BMQ99879 126 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 C20orf78Q9BR46 151 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 PRO0255Q9UI72 69 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 APLNQ9ULZ1 77 aa10.87□□□□□ -0.67
SS18-216ENST00000580751 TRBV10-1A0A0K0K1A3 114 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 TRBV6-5A0A0K0K1A5 114 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 TRBV6-4A0A1B0GX49 114 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 F5H697 171 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 M0QY20 66 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 ZNF56Q15929 161 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 KIAA1644Q3SXP7 199 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 SUMO4Q6EEV6 95 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 HHLA3Q9XRX5 114 aa10.86□□□□□ -0.67
SS18-216ENST00000580751 A0A0J9YY99 117 aa10.85□□□□□ -0.67
SS18-216ENST00000580751 RPL32P62910 135 aaKnown RBP10.85□□□□□ -0.67
SS18-216ENST00000580751 COA6Q5JTJ3 125 aaKnown RBP10.85□□□□□ -0.67
SS18-216ENST00000580751 DNAJC30Q96LL9 226 aa10.85□□□□□ -0.67
SS18-216ENST00000580751 PAX4O43316 350 aa10.84□□□□□ -0.67
SS18-216ENST00000580751 TNFRSF6BO95407 300 aa10.84□□□□□ -0.67
SS18-216ENST00000580751 CRYBA4P53673 196 aa10.84□□□□□ -0.67
SS18-216ENST00000580751 NRACQ8N912 160 aa10.84□□□□□ -0.67
SS18-216ENST00000580751 NIT2Q9NQR4 276 aa10.84□□□□□ -0.67
SS18-216ENST00000580751 NACAE9PAV3 2078 aa10.84□□□□□ -0.67
SS18-216ENST00000580751 K7EMI3 77 aa10.83□□□□□ -0.68
SS18-216ENST00000580751 NUDT3O95989 172 aa10.83□□□□□ -0.68
SS18-216ENST00000580751 GATA1P15976 413 aaPredicted RBP10.83□□□□□ -0.68
SS18-216ENST00000580751 C18orf32Q8TCD1 76 aa10.83□□□□□ -0.68
SS18-216ENST00000580751 VSIG2Q96IQ7 327 aa10.83□□□□□ -0.68
SS18-216ENST00000580751 MAP1LC3AQ9H492 121 aa10.83□□□□□ -0.68
SS18-216ENST00000580751 IGHV3-73A0A0B4J1V6 119 aa10.82□□□□□ -0.68
SS18-216ENST00000580751 NXT2Q9NPJ8 142 aaKnown RBP10.82□□□□□ -0.68
SS18-216ENST00000580751 TRAV26-2A0A0B4J265 109 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 TCAPO15273 167 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 NCR2O95944 276 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 NPYP01303 97 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 S100A6P06703 90 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 P0DMU3 169 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 FAM231AP0DMU4 169 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 FAM231CP0DMU5 169 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 SUMO2P61956 95 aaKnown RBP10.81□□□□□ -0.68
SS18-216ENST00000580751 RHOHQ15669 191 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 LINC00476Q8WZB0 136 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 PRADC1Q9BSG0 188 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 ST20Q9HBF5 79 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 ICOSQ9Y6W8 199 aa10.81□□□□□ -0.68
SS18-216ENST00000580751 KMT2CQ8NEZ4 4911 aaKnown RBP10.8□□□□□ -0.68
SS18-216ENST00000580751 LCE6AA0A183 80 aa10.8□□□□□ -0.68
SS18-216ENST00000580751 SMKR1H3BMG3 65 aa10.8□□□□□ -0.68
SS18-216ENST00000580751 K7EQD1 137 aa10.8□□□□□ -0.68
SS18-216ENST00000580751 PMCHP20382 165 aa10.8□□□□□ -0.68
SS18-216ENST00000580751 LGALS9CQ6DKI2 356 aa10.8□□□□□ -0.68
SS18-216ENST00000580751 BAGE3Q86Y29 109 aa10.8□□□□□ -0.68
SS18-216ENST00000580751 SLC25A29Q8N8R3 303 aa10.8□□□□□ -0.68
SS18-216ENST00000580751 CHCHD1Q96BP2 118 aaKnown RBP10.8□□□□□ -0.68
SS18-216ENST00000580751 LINC01546A6NGU7 62 aa10.79□□□□□ -0.68
SS18-216ENST00000580751 VCYO14598 125 aa10.79□□□□□ -0.68
SS18-216ENST00000580751 ESDP10768 282 aa10.79□□□□□ -0.68
SS18-216ENST00000580751 RPL36AP83881 106 aaKnown RBP10.79□□□□□ -0.68
SS18-216ENST00000580751 MRPL23Q16540 153 aaKnown RBP10.79□□□□□ -0.68
SS18-216ENST00000580751 Q8N8P6 123 aa10.79□□□□□ -0.68
SS18-216ENST00000580751 PRSS3P2Q8NHM4 247 aa10.79□□□□□ -0.68
SS18-216ENST00000580751 RPL36ALQ969Q0 106 aaKnown RBP10.79□□□□□ -0.68
SS18-216ENST00000580751 TNFRSF18Q9Y5U5 241 aa10.79□□□□□ -0.68
SS18-216ENST00000580751 ALMS1Q8TCU4 4167 aa10.78□□□□□ -0.68
SS18-216ENST00000580751 A0A096LPF7 62 aa10.78□□□□□ -0.68
SS18-216ENST00000580751 TRBV27A0A0K0K1C4 114 aa10.78□□□□□ -0.68
SS18-216ENST00000580751 LINC00614P0C842 121 aa10.78□□□□□ -0.68
SS18-216ENST00000580751 GYPEP15421 78 aa10.78□□□□□ -0.68
SS18-216ENST00000580751 POLR2KP53803 58 aaKnown RBP10.78□□□□□ -0.68
SS18-216ENST00000580751 Q6ZSN1 163 aa10.78□□□□□ -0.68
SS18-216ENST00000580751 SMIM2Q9BVW6 85 aa10.78□□□□□ -0.68
SS18-216ENST00000580751 TRBV7-3A0A075B6L6 115 aa10.77□□□□□ -0.69
SS18-216ENST00000580751 GAS8-AS1O95177 125 aa10.77□□□□□ -0.69
SS18-216ENST00000580751 LY6G6CO95867 125 aa10.77□□□□□ -0.69
SS18-216ENST00000580751 G0S2P27469 103 aa10.77□□□□□ -0.69
SS18-216ENST00000580751 NDUFA6P56556 154 aa10.77□□□□□ -0.69
SS18-216ENST00000580751 SH2D6Q7Z4S9 175 aa10.77□□□□□ -0.69
SS18-216ENST00000580751 RPL39LQ96EH5 51 aaKnown RBP10.77□□□□□ -0.69
SS18-216ENST00000580751 TMEM70Q9BUB7 260 aa10.77□□□□□ -0.69
SS18-216ENST00000580751 LYSTQ99698 3801 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 IGLV2-18A0A075B6J9 118 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 SDHAF1A6NFY7 115 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 CCL18P55774 89 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 FA2HQ7L5A8 372 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 DAZ4Q86SG3 579 aaKnown RBP10.76□□□□□ -0.69
SS18-216ENST00000580751 NIT1Q86X76 327 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 UBE2DNLQ8IWF7 75 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 NEXN-AS1Q8NBZ9 246 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 PACRGQ96M98 296 aaPredicted RBP10.76□□□□□ -0.69
SS18-216ENST00000580751 KIR2DL4Q99706 377 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 DAZ3Q9NR90 486 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms