RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NANOS2P60321 138 aaKnown RBP17.69■□□□□ 0.42
SHMT1-207ENST00000580002 LOC100131303A0A0U1RQF7 123 aa17.68■□□□□ 0.42
SHMT1-207ENST00000580002 NEGR1Q7Z3B1 354 aa17.68■□□□□ 0.42
SHMT1-207ENST00000580002 HTN3P15516 51 aa17.68■□□□□ 0.42
SHMT1-207ENST00000580002 OR10J3Q5JRS4 329 aa17.68■□□□□ 0.42
SHMT1-207ENST00000580002 STAB2Q8WWQ8 2551 aa17.67■□□□□ 0.42
SHMT1-207ENST00000580002 IFI27P40305 119 aaPredicted RBP17.66■□□□□ 0.42
SHMT1-207ENST00000580002 Q0VG73 95 aa17.66■□□□□ 0.42
SHMT1-207ENST00000580002 Q6ZTC4 211 aa17.66■□□□□ 0.42
SHMT1-207ENST00000580002 NEXN-AS1Q8NBZ9 246 aa17.66■□□□□ 0.42
SHMT1-207ENST00000580002 FBN3Q75N90 2809 aa17.65■□□□□ 0.42
SHMT1-207ENST00000580002 BAGE3Q86Y29 109 aa17.65■□□□□ 0.42
SHMT1-207ENST00000580002 NIT2Q9NQR4 276 aa17.65■□□□□ 0.42
SHMT1-207ENST00000580002 NIT1Q86X76 327 aa17.64■□□□□ 0.41
SHMT1-207ENST00000580002 C11orf45Q8TAV5 145 aa17.64■□□□□ 0.41
SHMT1-207ENST00000580002 HHLA3Q9XRX5 114 aa17.64■□□□□ 0.41
SHMT1-207ENST00000580002 K7EQD1 137 aa17.63■□□□□ 0.41
SHMT1-207ENST00000580002 SERF1AO75920 110 aa17.63■□□□□ 0.41
SHMT1-207ENST00000580002 ATP5G1P05496 136 aa17.63■□□□□ 0.41
SHMT1-207ENST00000580002 EDA2RQ9HAV5 297 aa17.63■□□□□ 0.41
SHMT1-207ENST00000580002 F5H768 121 aa17.63■□□□□ 0.41
SHMT1-207ENST00000580002 SUMO2P61956 95 aaKnown RBP17.63■□□□□ 0.41
SHMT1-207ENST00000580002 SNRPEP62304 92 aaKnown RBP17.63■□□□□ 0.41
SHMT1-207ENST00000580002 IGLV2-18A0A075B6J9 118 aa17.62■□□□□ 0.41
SHMT1-207ENST00000580002 A0A0J9YY99 117 aa17.62■□□□□ 0.41
SHMT1-207ENST00000580002 MAP1LC3AQ9H492 121 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 ST20Q9HBF5 79 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 LAMTOR2Q9Y2Q5 125 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 CRYBA4P53673 196 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 POLR2KP53803 58 aaKnown RBP17.61■□□□□ 0.41
SHMT1-207ENST00000580002 ZNRF2Q8NHG8 242 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 PRSS3P2Q8NHM4 247 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 VSIG2Q96IQ7 327 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 TMEM70Q9BUB7 260 aa17.61■□□□□ 0.41
SHMT1-207ENST00000580002 TRBV6-5A0A0K0K1A5 114 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 TEX48A0A1B0GUV7 120 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 TRBV6-4A0A1B0GX49 114 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 GAGE12JA6NER3 117 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 SDHAF1A6NFY7 115 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 H7C1H1 209 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 GAGE1Q13065 139 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 GAGE4Q13068 117 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 GAGE5Q13069 117 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 GAGE13Q4V321 117 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 PDZD11Q5EBL8 140 aa17.6■□□□□ 0.41
SHMT1-207ENST00000580002 IGHV3-38A0A0C4DH36 116 aa17.59■□□□□ 0.41
SHMT1-207ENST00000580002 TCAPO15273 167 aa17.59■□□□□ 0.41
SHMT1-207ENST00000580002 CIDEAO60543 219 aa17.59■□□□□ 0.41
SHMT1-207ENST00000580002 RNASEKQ6P5S7 137 aaKnown RBP17.59■□□□□ 0.41
SHMT1-207ENST00000580002 PRSS47A8MTI9 375 aa17.58■□□□□ 0.41
SHMT1-207ENST00000580002 S100A6P06703 90 aa17.58■□□□□ 0.41
SHMT1-207ENST00000580002 COA6Q5JTJ3 125 aaKnown RBP17.58■□□□□ 0.41
SHMT1-207ENST00000580002 PHLDA1Q8WV24 401 aaPredicted RBP17.58■□□□□ 0.41
SHMT1-207ENST00000580002 C20orf78Q9BR46 151 aa17.58■□□□□ 0.41
SHMT1-207ENST00000580002 SMIM2Q9BVW6 85 aa17.58■□□□□ 0.41
SHMT1-207ENST00000580002 NHLRC4P0CG21 123 aaPredicted RBP17.58■□□□□ 0.4
SHMT1-207ENST00000580002 PMCHL1Q16048 86 aa17.58■□□□□ 0.4
SHMT1-207ENST00000580002 PRO0255Q9UI72 69 aa17.58■□□□□ 0.4
SHMT1-207ENST00000580002 TNFRSF18Q9Y5U5 241 aa17.58■□□□□ 0.4
SHMT1-207ENST00000580002 TRAV26-1A0A087WT03 109 aa17.57■□□□□ 0.4
SHMT1-207ENST00000580002 LINC00614P0C842 121 aa17.57■□□□□ 0.4
SHMT1-207ENST00000580002 LOC105371267A0A1B0GV96 52 aa17.56■□□□□ 0.4
SHMT1-207ENST00000580002 C5orf52A6NGY3 159 aa17.56■□□□□ 0.4
SHMT1-207ENST00000580002 Q8N8P6 123 aa17.56■□□□□ 0.4
SHMT1-207ENST00000580002 PPP1R17O96001 155 aa17.56■□□□□ 0.4
SHMT1-207ENST00000580002 RHOHQ15669 191 aa17.56■□□□□ 0.4
SHMT1-207ENST00000580002 FAM19A2Q8N3H0 131 aa17.56■□□□□ 0.4
SHMT1-207ENST00000580002 PAX4O43316 350 aa17.55■□□□□ 0.4
SHMT1-207ENST00000580002 GYPEP15421 78 aa17.55■□□□□ 0.4
SHMT1-207ENST00000580002 TRBV7-3A0A075B6L6 115 aa17.54■□□□□ 0.4
SHMT1-207ENST00000580002 FA2HQ7L5A8 372 aa17.54■□□□□ 0.4
SHMT1-207ENST00000580002 TRBV10-1A0A0K0K1A3 114 aa17.53■□□□□ 0.4
SHMT1-207ENST00000580002 PRADC1Q9BSG0 188 aa17.53■□□□□ 0.4
SHMT1-207ENST00000580002 A0A096LPF7 62 aa17.53■□□□□ 0.4
SHMT1-207ENST00000580002 DNAJC30Q96LL9 226 aa17.53■□□□□ 0.4
SHMT1-207ENST00000580002 TRBV27A0A0K0K1C4 114 aa17.52■□□□□ 0.4
SHMT1-207ENST00000580002 IFITM10A6NMD0 228 aa17.52■□□□□ 0.4
SHMT1-207ENST00000580002 UBE2D3P61077 147 aa17.52■□□□□ 0.4
SHMT1-207ENST00000580002 UBE2D2P62837 147 aa17.52■□□□□ 0.4
SHMT1-207ENST00000580002 RPL36AP83881 106 aaKnown RBP17.52■□□□□ 0.4
SHMT1-207ENST00000580002 RPL36ALQ969Q0 106 aaKnown RBP17.52■□□□□ 0.4
SHMT1-207ENST00000580002 NXT2Q9NPJ8 142 aaKnown RBP17.52■□□□□ 0.4
SHMT1-207ENST00000580002 DEFB131BA0A096LNP1 70 aa17.51■□□□□ 0.39
SHMT1-207ENST00000580002 VCYO14598 125 aa17.51■□□□□ 0.39
SHMT1-207ENST00000580002 PMCHP20382 165 aa17.51■□□□□ 0.39
SHMT1-207ENST00000580002 HIST3H2BBQ8N257 126 aa17.51■□□□□ 0.39
SHMT1-207ENST00000580002 TSHBP01222 138 aa17.5■□□□□ 0.39
SHMT1-207ENST00000580002 LINC00694P0DN24 101 aa17.5■□□□□ 0.39
SHMT1-207ENST00000580002 RPL32P62910 135 aaKnown RBP17.5■□□□□ 0.39
SHMT1-207ENST00000580002 AP5S1Q9NUS5 200 aa17.5■□□□□ 0.39
SHMT1-207ENST00000580002 A0A096LNJ9 63 aa17.49■□□□□ 0.39
SHMT1-207ENST00000580002 LINC01546A6NGU7 62 aa17.49■□□□□ 0.39
SHMT1-207ENST00000580002 ESDP10768 282 aa17.48■□□□□ 0.39
SHMT1-207ENST00000580002 CHCHD1Q96BP2 118 aaKnown RBP17.48■□□□□ 0.39
SHMT1-207ENST00000580002 IGHV1-24A0A0C4DH33 117 aa17.48■□□□□ 0.39
SHMT1-207ENST00000580002 I3L3M4 83 aa17.48■□□□□ 0.39
SHMT1-207ENST00000580002 HSBP1O75506 76 aa17.47■□□□□ 0.39
SHMT1-207ENST00000580002 NTM-AS1Q6ZSK4 140 aa17.46■□□□□ 0.39
SHMT1-207ENST00000580002 LAGE3Q14657 143 aa17.45■□□□□ 0.38
SHMT1-207ENST00000580002 TGP01266 2768 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms