RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 A0A1W2PPV4 95 aa7.84□□□□□ -1.15
CCDC40-208ENST00000572270 KRBOX1C9JBD0 128 aa7.84□□□□□ -1.15
CCDC40-208ENST00000572270 CARD19Q96LW7 228 aa7.84□□□□□ -1.15
CCDC40-208ENST00000572270 MUC17Q685J3 4493 aa7.84□□□□□ -1.16
CCDC40-208ENST00000572270 F5H697 171 aa7.83□□□□□ -1.16
CCDC40-208ENST00000572270 TSPAN13O95857 204 aa7.83□□□□□ -1.16
CCDC40-208ENST00000572270 IGLV7-43P04211 117 aa7.83□□□□□ -1.16
CCDC40-208ENST00000572270 CYCSP99999 105 aaKnown RBP7.83□□□□□ -1.16
CCDC40-208ENST00000572270 IGKV3OR2-268A0A0C4DH90 116 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 UBE2L6O14933 153 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 AMTP48728 403 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 PTTG1IPP53801 180 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 TMBIM6P55061 237 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 SRSF3P84103 164 aaKnown RBP7.82□□□□□ -1.16
CCDC40-208ENST00000572270 TMEM243Q9BU79 118 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 ARL2-SNX15V9GYD0 113 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 V9GYH0 126 aa7.82□□□□□ -1.16
CCDC40-208ENST00000572270 H3BMQ9 156 aa7.81□□□□□ -1.16
CCDC40-208ENST00000572270 HMGB3O15347 200 aaKnown RBP7.81□□□□□ -1.16
CCDC40-208ENST00000572270 EIF5AP63241 154 aaKnown RBP7.81□□□□□ -1.16
CCDC40-208ENST00000572270 GAGE2BQ13066 116 aa7.81□□□□□ -1.16
CCDC40-208ENST00000572270 CDIP1Q9H305 208 aa7.81□□□□□ -1.16
CCDC40-208ENST00000572270 EPDR1Q9UM22 224 aa7.81□□□□□ -1.16
CCDC40-208ENST00000572270 TMSB15BA0A087X1C1 80 aa7.8□□□□□ -1.16
CCDC40-208ENST00000572270 KRTAP1-4P0C5Y4 121 aa7.8□□□□□ -1.16
CCDC40-208ENST00000572270 ZNF674Q2M3X9 581 aa7.8□□□□□ -1.16
CCDC40-208ENST00000572270 CNPY1Q3B7I2 92 aa7.8□□□□□ -1.16
CCDC40-208ENST00000572270 SCGB1C1Q8TD33 95 aa7.8□□□□□ -1.16
CCDC40-208ENST00000572270 TRAV34A0A0B4J273 112 aa7.79□□□□□ -1.16
CCDC40-208ENST00000572270 A0A1W2PNN7 141 aa7.79□□□□□ -1.16
CCDC40-208ENST00000572270 CENPXA8MT69 81 aa7.79□□□□□ -1.16
CCDC40-208ENST00000572270 ARL14EPLP0DKL9 152 aa7.79□□□□□ -1.16
CCDC40-208ENST00000572270 SUMO1P63165 101 aaKnown RBP7.79□□□□□ -1.16
CCDC40-208ENST00000572270 TRIQKQ629K1 86 aa7.79□□□□□ -1.16
CCDC40-208ENST00000572270 LOC107984640A0A0U1RRK4 108 aa7.78□□□□□ -1.16
CCDC40-208ENST00000572270 A6NHS1 94 aa7.78□□□□□ -1.16
CCDC40-208ENST00000572270 SH2D1AO60880 128 aa7.78□□□□□ -1.16
CCDC40-208ENST00000572270 IL15RAQ13261 267 aa7.78□□□□□ -1.16
CCDC40-208ENST00000572270 PHF5AQ7RTV0 110 aaKnown RBP7.78□□□□□ -1.16
CCDC40-208ENST00000572270 CHCHD10Q8WYQ3 142 aaPredicted RBP7.78□□□□□ -1.16
CCDC40-208ENST00000572270 MLST8Q9BVC4 326 aa7.78□□□□□ -1.16
CCDC40-208ENST00000572270 RBM38Q9H0Z9 239 aaKnown RBP7.78□□□□□ -1.16
CCDC40-208ENST00000572270 S100A5P33763 92 aa7.77□□□□□ -1.17
CCDC40-208ENST00000572270 C9orf116Q5BN46 136 aaPredicted RBP7.77□□□□□ -1.17
CCDC40-208ENST00000572270 FAM162BQ5T6X4 162 aa7.77□□□□□ -1.17
CCDC40-208ENST00000572270 LINC00526Q96FQ7 95 aa7.77□□□□□ -1.17
CCDC40-208ENST00000572270 ZNF471Q9BX82 626 aaPredicted RBP7.77□□□□□ -1.17
CCDC40-208ENST00000572270 SMIM17P0DL12 118 aa7.76□□□□□ -1.17
CCDC40-208ENST00000572270 BTCP35070 178 aa7.76□□□□□ -1.17
CCDC40-208ENST00000572270 CRIP1P50238 77 aa7.76□□□□□ -1.17
CCDC40-208ENST00000572270 SYCNQ0VAF6 134 aa7.76□□□□□ -1.17
CCDC40-208ENST00000572270 LINC01559Q495D7 138 aa7.76□□□□□ -1.17
CCDC40-208ENST00000572270 Q86TA4 180 aa7.76□□□□□ -1.17
CCDC40-208ENST00000572270 SDHCQ99643 169 aaPredicted RBP7.76□□□□□ -1.17
CCDC40-208ENST00000572270 CARHSP1Q9Y2V2 147 aaKnown RBP7.76□□□□□ -1.17
CCDC40-208ENST00000572270 A0A087WZ39 114 aa7.75□□□□□ -1.17
CCDC40-208ENST00000572270 IGHV1-58A0A0C4DH39 117 aa7.75□□□□□ -1.17
CCDC40-208ENST00000572270 ZNF561-AS1K7EIQ3 104 aa7.75□□□□□ -1.17
CCDC40-208ENST00000572270 NOL3O60936 208 aaKnown RBP7.75□□□□□ -1.17
CCDC40-208ENST00000572270 FGF6P10767 208 aa7.75□□□□□ -1.17
CCDC40-208ENST00000572270 SEC22CQ9BRL7 303 aa7.75□□□□□ -1.17
CCDC40-208ENST00000572270 KRTAP9-7A8MTY7 169 aa7.74□□□□□ -1.17
CCDC40-208ENST00000572270 GCHFRP30047 84 aa7.74□□□□□ -1.17
CCDC40-208ENST00000572270 RPL12P30050 165 aaKnown RBP7.74□□□□□ -1.17
CCDC40-208ENST00000572270 CDC34P49427 236 aaPredicted RBP7.74□□□□□ -1.17
CCDC40-208ENST00000572270 FOXI1Q12951 378 aa7.74□□□□□ -1.17
CCDC40-208ENST00000572270 SPANXN1Q5VSR9 72 aa7.74□□□□□ -1.17
CCDC40-208ENST00000572270 OR10AG1Q8NH19 301 aa7.74□□□□□ -1.17
CCDC40-208ENST00000572270 TSKUQ8WUA8 353 aa7.74□□□□□ -1.17
CCDC40-208ENST00000572270 ISOC2Q96AB3 205 aa7.74□□□□□ -1.17
CCDC40-208ENST00000572270 STAG3L2P0CL84 134 aa7.73□□□□□ -1.17
CCDC40-208ENST00000572270 STAG3L3P0CL85 134 aa7.73□□□□□ -1.17
CCDC40-208ENST00000572270 TPRXLQ17RH7 258 aa7.73□□□□□ -1.17
CCDC40-208ENST00000572270 LRRC37A5PQ49AS3 106 aa7.73□□□□□ -1.17
CCDC40-208ENST00000572270 TMEM167BQ9NRX6 74 aa7.73□□□□□ -1.17
CCDC40-208ENST00000572270 BCL2P10415 239 aa7.72□□□□□ -1.17
CCDC40-208ENST00000572270 CRYGAP11844 174 aa7.72□□□□□ -1.17
CCDC40-208ENST00000572270 RPL18AQ02543 176 aaKnown RBP7.72□□□□□ -1.17
CCDC40-208ENST00000572270 PGLYRP4Q96LB8 373 aa7.72□□□□□ -1.17
CCDC40-208ENST00000572270 ZFP30Q9Y2G7 519 aa7.72□□□□□ -1.17
CCDC40-208ENST00000572270 PEX7O00628 323 aa7.71□□□□□ -1.18
CCDC40-208ENST00000572270 XCL1P47992 114 aa7.71□□□□□ -1.18
CCDC40-208ENST00000572270 CAMPP49913 170 aa7.71□□□□□ -1.18
CCDC40-208ENST00000572270 AMMECR1LQ6DCA0 310 aa7.71□□□□□ -1.18
CCDC40-208ENST00000572270 AP1S3Q96PC3 154 aa7.71□□□□□ -1.18
CCDC40-208ENST00000572270 SMIM3Q9BZL3 60 aa7.71□□□□□ -1.18
CCDC40-208ENST00000572270 MED28Q9H204 178 aa7.71□□□□□ -1.18
CCDC40-208ENST00000572270 MGPP08493 103 aa7.7□□□□□ -1.18
CCDC40-208ENST00000572270 NKX2-5P52952 324 aaPredicted RBP7.7□□□□□ -1.18
CCDC40-208ENST00000572270 DEFA3P59666 94 aa7.7□□□□□ -1.18
CCDC40-208ENST00000572270 SSTP61278 116 aa7.7□□□□□ -1.18
CCDC40-208ENST00000572270 COTL1Q14019 142 aa7.7□□□□□ -1.18
CCDC40-208ENST00000572270 COX8CQ7Z4L0 72 aa7.7□□□□□ -1.18
CCDC40-208ENST00000572270 HSPB11Q9Y547 144 aa7.7□□□□□ -1.18
CCDC40-208ENST00000572270 MUC21A0A140T8X8 626 aa7.69□□□□□ -1.18
CCDC40-208ENST00000572270 A0A1W2PRE2 83 aa7.69□□□□□ -1.18
CCDC40-208ENST00000572270 M0QY20 66 aa7.69□□□□□ -1.18
CCDC40-208ENST00000572270 APOMO95445 188 aa7.69□□□□□ -1.18
CCDC40-208ENST00000572270 CXorf1O96002 111 aa7.69□□□□□ -1.18
CCDC40-208ENST00000572270 EIF5AL1Q6IS14 154 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms