RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 RNF183Q96D59 192 aa13.61□□□□□ -0.23
CLN3-233ENST00000568452 C12orf57Q99622 126 aa13.61□□□□□ -0.23
CLN3-233ENST00000568452 TMEM70Q9BUB7 260 aa13.61□□□□□ -0.23
CLN3-233ENST00000568452 FCER1GP30273 86 aa13.61□□□□□ -0.23
CLN3-233ENST00000568452 KRTDAPP60985 99 aa13.61□□□□□ -0.23
CLN3-233ENST00000568452 ORMDL2Q53FV1 153 aa13.61□□□□□ -0.23
CLN3-233ENST00000568452 TRGV2A0A075B6R0 118 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 GAGE12BA1L429 117 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 SDHAF1A6NFY7 115 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 GAGE7O76087 117 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 GAGE12FP0CL80 117 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 GAGE12GP0CL81 117 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 GAGE12IP0CL82 117 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 MIFP14174 115 aa13.6□□□□□ -0.23
CLN3-233ENST00000568452 A0A096LNJ9 63 aa13.59□□□□□ -0.23
CLN3-233ENST00000568452 EMP1P54849 157 aa13.59□□□□□ -0.23
CLN3-233ENST00000568452 S100A12P80511 92 aa13.59□□□□□ -0.23
CLN3-233ENST00000568452 KIR2DL4Q99706 377 aa13.59□□□□□ -0.23
CLN3-233ENST00000568452 TRBV27A0A0K0K1C4 114 aa13.58□□□□□ -0.24
CLN3-233ENST00000568452 TCAPO15273 167 aa13.58□□□□□ -0.24
CLN3-233ENST00000568452 C3orf79P0CE67 100 aa13.58□□□□□ -0.24
CLN3-233ENST00000568452 ZNF479Q96JC4 524 aa13.58□□□□□ -0.24
CLN3-233ENST00000568452 DNAJC30Q96LL9 226 aa13.58□□□□□ -0.24
CLN3-233ENST00000568452 LYRM9A8MSI8 78 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 SCGB1D1O95968 90 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 BTF3P20290 206 aaKnown RBP13.57□□□□□ -0.24
CLN3-233ENST00000568452 TNFRSF18Q9Y5U5 241 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 G0S2P27469 103 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 LINC00612Q8N6U2 182 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 C18orf15Q96N68 181 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 MAP1LC3CQ9BXW4 147 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 TP53TG1Q9Y2A0 90 aa13.57□□□□□ -0.24
CLN3-233ENST00000568452 NUDT3O95989 172 aa13.56□□□□□ -0.24
CLN3-233ENST00000568452 Q6ZSN1 163 aa13.56□□□□□ -0.24
CLN3-233ENST00000568452 NACAE9PAV3 2078 aa13.56□□□□□ -0.24
CLN3-233ENST00000568452 IGHV4-28A0A0C4DH34 117 aa13.55□□□□□ -0.24
CLN3-233ENST00000568452 CMYA5Q8N3K9 4069 aa13.55□□□□□ -0.24
CLN3-233ENST00000568452 TRBV10-1A0A0K0K1A3 114 aa13.54□□□□□ -0.24
CLN3-233ENST00000568452 LINC01549A6NIU2 74 aa13.54□□□□□ -0.24
CLN3-233ENST00000568452 I3L3M4 83 aa13.54□□□□□ -0.24
CLN3-233ENST00000568452 LINC00173Q6ZV60 143 aa13.54□□□□□ -0.24
CLN3-233ENST00000568452 K7EQD1 137 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 P0DMU3 169 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 FAM231AP0DMU4 169 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 FAM231CP0DMU5 169 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 NEGR1Q7Z3B1 354 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 Q8NAQ8 132 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 NEXN-AS1Q8NBZ9 246 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 SYS1-DBNDD2H3BUS1 97 aa13.53□□□□□ -0.24
CLN3-233ENST00000568452 KPRPQ5T749 579 aaPredicted RBP13.53□□□□□ -0.24
CLN3-233ENST00000568452 TRGV4A0A0C4DH28 118 aa13.52□□□□□ -0.25
CLN3-233ENST00000568452 ATP5LO75964 103 aa13.52□□□□□ -0.25
CLN3-233ENST00000568452 DEFB130BP0DP73 79 aa13.52□□□□□ -0.25
CLN3-233ENST00000568452 DEFB130AP0DP74 79 aa13.52□□□□□ -0.25
CLN3-233ENST00000568452 RHOHQ15669 191 aa13.52□□□□□ -0.25
CLN3-233ENST00000568452 FAM222AQ5U5X8 452 aa13.52□□□□□ -0.25
CLN3-233ENST00000568452 PET117Q6UWS5 81 aa13.52□□□□□ -0.25
CLN3-233ENST00000568452 TRBV6-4A0A1B0GX49 114 aa13.51□□□□□ -0.25
CLN3-233ENST00000568452 C20orf202A1L168 122 aa13.51□□□□□ -0.25
CLN3-233ENST00000568452 IFI27L1Q96BM0 104 aa13.51□□□□□ -0.25
CLN3-233ENST00000568452 DKK2Q9UBU2 259 aa13.51□□□□□ -0.25
CLN3-233ENST00000568452 RPL36AP83881 106 aaKnown RBP13.5□□□□□ -0.25
CLN3-233ENST00000568452 RPL36ALQ969Q0 106 aaKnown RBP13.5□□□□□ -0.25
CLN3-233ENST00000568452 TOMM6Q96B49 74 aa13.5□□□□□ -0.25
CLN3-233ENST00000568452 SPATA12Q7Z6I5 190 aa13.5□□□□□ -0.25
CLN3-233ENST00000568452 SLC25A29Q8N8R3 303 aa13.5□□□□□ -0.25
CLN3-233ENST00000568452 Q8N976 141 aa13.5□□□□□ -0.25
CLN3-233ENST00000568452 TEX48A0A1B0GUV7 120 aa13.49□□□□□ -0.25
CLN3-233ENST00000568452 FHL2Q14192 279 aa13.49□□□□□ -0.25
CLN3-233ENST00000568452 C2orf66Q6UXQ4 117 aa13.49□□□□□ -0.25
CLN3-233ENST00000568452 CYSLTR1Q9Y271 337 aa13.49□□□□□ -0.25
CLN3-233ENST00000568452 TRBV7-3A0A075B6L6 115 aa13.48□□□□□ -0.25
CLN3-233ENST00000568452 TSHBP01222 138 aa13.48□□□□□ -0.25
CLN3-233ENST00000568452 SPART-AS1P0CW21 52 aa13.48□□□□□ -0.25
CLN3-233ENST00000568452 CDPF1Q6NVV7 123 aa13.48□□□□□ -0.25
CLN3-233ENST00000568452 DEFB4AO15263 64 aa13.47□□□□□ -0.25
CLN3-233ENST00000568452 DAD1P61803 113 aa13.47□□□□□ -0.25
CLN3-233ENST00000568452 ZNRF2Q8NHG8 242 aa13.47□□□□□ -0.25
CLN3-233ENST00000568452 PRADC1Q9BSG0 188 aa13.47□□□□□ -0.25
CLN3-233ENST00000568452 SCGB3A1Q96QR1 104 aa13.46□□□□□ -0.25
CLN3-233ENST00000568452 Q9UF83 564 aa13.46□□□□□ -0.25
CLN3-233ENST00000568452 DNHD1Q96M86 4753 aa13.46□□□□□ -0.25
CLN3-233ENST00000568452 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.46□□□□□ -0.26
CLN3-233ENST00000568452 TEX43Q6ZNM6 134 aa13.46□□□□□ -0.26
CLN3-233ENST00000568452 H0Y8G0 127 aa13.45□□□□□ -0.26
CLN3-233ENST00000568452 CTAG1AP78358 180 aa13.45□□□□□ -0.26
CLN3-233ENST00000568452 COTL1Q14019 142 aa13.45□□□□□ -0.26
CLN3-233ENST00000568452 ERASQ7Z444 233 aa13.45□□□□□ -0.26
CLN3-233ENST00000568452 DAZ4Q86SG3 579 aaKnown RBP13.45□□□□□ -0.26
CLN3-233ENST00000568452 DAZ3Q9NR90 486 aaKnown RBP13.45□□□□□ -0.26
CLN3-233ENST00000568452 K7EIL1 84 aa13.44□□□□□ -0.26
CLN3-233ENST00000568452 LINC01545Q5VT33 79 aa13.44□□□□□ -0.26
CLN3-233ENST00000568452 LGALS9CQ6DKI2 356 aa13.44□□□□□ -0.26
CLN3-233ENST00000568452 HHLA3Q9XRX5 114 aa13.44□□□□□ -0.26
CLN3-233ENST00000568452 GAGE12JA6NER3 117 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 PRSS1P07477 247 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 UBE2D3P61077 147 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 UBE2D2P62837 147 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 GAGE1Q13065 139 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 GAGE4Q13068 117 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms