RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CDIP1Q9H305 208 aa9.96□□□□□ -0.82
VPS4A-204ENST00000566354 AGRNO00468 2067 aa9.96□□□□□ -0.82
VPS4A-204ENST00000566354 IGHV4-59P01825 116 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 ANXA2RQ3ZCQ2 193 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 UNQ9165/PRO28630Q6UXU0 137 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 FAM19A4Q96LR4 140 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 SMR3AQ99954 134 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 LINC00527Q9UJ94 153 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 HIVEP1P15822 2718 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 BAALCQ8WXS3 180 aa9.95□□□□□ -0.82
VPS4A-204ENST00000566354 ANK3Q12955 4377 aaKnown RBP9.94□□□□□ -0.82
VPS4A-204ENST00000566354 A6NDX4 124 aa9.94□□□□□ -0.82
VPS4A-204ENST00000566354 H3BMG7 143 aa9.94□□□□□ -0.82
VPS4A-204ENST00000566354 WFDC2Q14508 124 aa9.94□□□□□ -0.82
VPS4A-204ENST00000566354 APRG1Q8IVJ8 170 aa9.94□□□□□ -0.82
VPS4A-204ENST00000566354 SPRY2O43597 315 aa9.94□□□□□ -0.82
VPS4A-204ENST00000566354 MGPP08493 103 aa9.94□□□□□ -0.82
VPS4A-204ENST00000566354 RNASE4P34096 147 aaKnown RBP9.94□□□□□ -0.82
VPS4A-204ENST00000566354 PPDPFQ9H3Y8 114 aa9.94□□□□□ -0.82
VPS4A-204ENST00000566354 PRSS29PA6NIE9 313 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 TMEM262E9PQX1 116 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 HOXA3O43365 443 aaPredicted RBP9.93□□□□□ -0.82
VPS4A-204ENST00000566354 TRBV12-3P01733 135 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 LGALS1P09382 135 aaKnown RBP9.93□□□□□ -0.82
VPS4A-204ENST00000566354 NHLRC4P0CG21 123 aaPredicted RBP9.93□□□□□ -0.82
VPS4A-204ENST00000566354 POM121L12Q8N7R1 296 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 USMG5Q96IX5 58 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 HIVEP2P31629 2446 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 CUBNO60494 3623 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 RHODO00212 210 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 GAGE13Q4V321 117 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 PRADC1Q9BSG0 188 aa9.93□□□□□ -0.82
VPS4A-204ENST00000566354 NF1P21359 2839 aa9.92□□□□□ -0.82
VPS4A-204ENST00000566354 LINC01549A6NIU2 74 aa9.92□□□□□ -0.82
VPS4A-204ENST00000566354 GNRH2O43555 120 aa9.92□□□□□ -0.82
VPS4A-204ENST00000566354 RNASE3P12724 160 aaKnown RBP9.92□□□□□ -0.82
VPS4A-204ENST00000566354 RPL11P62913 178 aaKnown RBP9.92□□□□□ -0.82
VPS4A-204ENST00000566354 FOXI1Q12951 378 aa9.92□□□□□ -0.82
VPS4A-204ENST00000566354 H3BUA1 57 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 NXPH4O95158 308 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 IGHV4OR15-8A0A075B7B6 117 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 A0A087WW49 117 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 A0A1B0GX51 115 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 DEFB1P60022 68 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 BLCAPP62952 87 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 AMTNQ6UX39 209 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 Q6YL49 198 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 Q6ZS46 218 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 OR13C6PQ8NH95 151 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 SPANXDQ9BXN6 97 aa9.91□□□□□ -0.82
VPS4A-204ENST00000566354 ZNF815PA8K554 130 aa9.9□□□□□ -0.82
VPS4A-204ENST00000566354 ETDBQ3ZM63 59 aa9.9□□□□□ -0.82
VPS4A-204ENST00000566354 PAPPA-AS1Q5QFB9 102 aa9.9□□□□□ -0.82
VPS4A-204ENST00000566354 F6UB75 175 aa9.9□□□□□ -0.82
VPS4A-204ENST00000566354 MORN3Q6PF18 240 aaPredicted RBP9.9□□□□□ -0.82
VPS4A-204ENST00000566354 SCGB1D4Q6XE38 83 aa9.9□□□□□ -0.82
VPS4A-204ENST00000566354 PRO0461Q9UI25 63 aa9.9□□□□□ -0.82
VPS4A-204ENST00000566354 KIF25-AS1Q9Y6Z4 181 aa9.9□□□□□ -0.82
VPS4A-204ENST00000566354 NDUFV3P56181 108 aaKnown RBP9.89□□□□□ -0.83
VPS4A-204ENST00000566354 RPS28P62857 69 aaKnown RBP9.89□□□□□ -0.83
VPS4A-204ENST00000566354 IGHG2P01859 326 aa9.89□□□□□ -0.83
VPS4A-204ENST00000566354 MT-ATP8P03928 68 aa9.89□□□□□ -0.83
VPS4A-204ENST00000566354 LINC00315P59091 139 aa9.89□□□□□ -0.83
VPS4A-204ENST00000566354 SH2D6Q7Z4S9 175 aa9.89□□□□□ -0.83
VPS4A-204ENST00000566354 RHPN1-AS1Q9BWJ2 59 aa9.89□□□□□ -0.83
VPS4A-204ENST00000566354 DUSP14O95147 198 aaKnown RBP9.88□□□□□ -0.83
VPS4A-204ENST00000566354 LY6G6DO95868 133 aa9.88□□□□□ -0.83
VPS4A-204ENST00000566354 IGHV3-11P01762 117 aa9.88□□□□□ -0.83
VPS4A-204ENST00000566354 CRYGDP07320 174 aa9.88□□□□□ -0.83
VPS4A-204ENST00000566354 SRSF9Q13242 221 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS4A-204ENST00000566354 SYT8Q8NBV8 401 aa9.88□□□□□ -0.83
VPS4A-204ENST00000566354 NSD1Q96L73 2696 aaPredicted RBP9.88□□□□□ -0.83
VPS4A-204ENST00000566354 IGIPA6NJ69 53 aa9.88□□□□□ -0.83
VPS4A-204ENST00000566354 KLLNB2CW77 178 aa9.88□□□□□ -0.83
VPS4A-204ENST00000566354 POLR2KP53803 58 aaKnown RBP9.88□□□□□ -0.83
VPS4A-204ENST00000566354 FAM159AQ6UWV7 190 aa9.88□□□□□ -0.83
VPS4A-204ENST00000566354 VCYO14598 125 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 UBE2D1P51668 147 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 HERVK_113P61574 105 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 PMVKQ15126 192 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 TMEM141Q96I45 108 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 DAZ1Q9NQZ3 744 aaKnown RBP9.87□□□□□ -0.83
VPS4A-204ENST00000566354 TP53TG1Q9Y2A0 90 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 IGKV3-7A0A075B6H7 116 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 TSHBP01222 138 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 XGP55808 180 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 ZFP2Q6ZN57 461 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 KIR2DL4Q99706 377 aa9.87□□□□□ -0.83
VPS4A-204ENST00000566354 IGLV4-69A0A075B6H9 119 aa9.86□□□□□ -0.83
VPS4A-204ENST00000566354 C11orf86A6NJI1 115 aa9.86□□□□□ -0.83
VPS4A-204ENST00000566354 PLEKHB2Q96CS7 222 aa9.86□□□□□ -0.83
VPS4A-204ENST00000566354 F8P00451 2351 aa9.86□□□□□ -0.83
VPS4A-204ENST00000566354 KLHL30-AS1Q8NEE0 82 aa9.85□□□□□ -0.83
VPS4A-204ENST00000566354 DLX4Q92988 240 aaPredicted RBP9.85□□□□□ -0.83
VPS4A-204ENST00000566354 TIMM17AQ99595 171 aa9.85□□□□□ -0.83
VPS4A-204ENST00000566354 MUC4Q99102 2169 aa9.85□□□□□ -0.83
VPS4A-204ENST00000566354 J3KT08 172 aa9.85□□□□□ -0.83
VPS4A-204ENST00000566354 APOMO95445 188 aa9.85□□□□□ -0.83
VPS4A-204ENST00000566354 IFITM1P13164 125 aa9.85□□□□□ -0.83
VPS4A-204ENST00000566354 SUMO4Q6EEV6 95 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms