RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TRGV11A0A075B6L2 103 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 C19orf84I3L1E1 186 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 SCGB1D4Q6XE38 83 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 NEXN-AS1Q8NBZ9 246 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 C1orf43Q9BWL3 253 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 PKIGQ9Y2B9 76 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 FAM223BA6NKX1 122 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 RNF223E7ERA6 249 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 FAM223AQ8IWN6 122 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 KIR2DL5BQ8NHK3 375 aa8.51□□□□□ -1.05
CUX1-218ENST00000560541 SOCS3O14543 225 aa8.5□□□□□ -1.05
CUX1-218ENST00000560541 IGHV4-38-2P0DP08 117 aa8.5□□□□□ -1.05
CUX1-218ENST00000560541 BLCAPP62952 87 aa8.5□□□□□ -1.05
CUX1-218ENST00000560541 SPANXA1Q9NS26 97 aa8.5□□□□□ -1.05
CUX1-218ENST00000560541 TRAV12-1A0A0B4J245 112 aa8.5□□□□□ -1.05
CUX1-218ENST00000560541 RNASE3P12724 160 aaKnown RBP8.5□□□□□ -1.05
CUX1-218ENST00000560541 KLHL30-AS1Q8NEE0 82 aa8.5□□□□□ -1.05
CUX1-218ENST00000560541 BEX4Q9NWD9 120 aaPredicted RBP8.5□□□□□ -1.05
CUX1-218ENST00000560541 J3QLI3 93 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 LGALS1P09382 135 aaKnown RBP8.49□□□□□ -1.05
CUX1-218ENST00000560541 C19orf54Q5BKX5 351 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 A0A087WWL8 130 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 ZNF815PA8K554 130 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 OVOL1O14753 267 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 IGHV4-39P01824 125 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 UBE2D3P61077 147 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 UBE2D2P62837 147 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 PLEKHB2Q96CS7 222 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 RHPN1-AS1Q9BWJ2 59 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 UTP20O75691 2785 aaKnown RBP8.49□□□□□ -1.05
CUX1-218ENST00000560541 FLNCQ14315 2725 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 USP9YO00507 2555 aaPredicted RBP8.49□□□□□ -1.05
CUX1-218ENST00000560541 IGHV1-69DA0A0B4J2H0 117 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 H3BUX3 64 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 NDUFA4O00483 81 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 IGHV1-69P01742 117 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 SLC25A16P16260 332 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 GAGE2AQ6NT46 116 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 LENEPQ9Y5L5 61 aa8.49□□□□□ -1.05
CUX1-218ENST00000560541 LYRM7Q5U5X0 104 aa8.48□□□□□ -1.05
CUX1-218ENST00000560541 C3orf22Q8N5N4 141 aa8.48□□□□□ -1.05
CUX1-218ENST00000560541 CENPEQ02224 2701 aa8.48□□□□□ -1.05
CUX1-218ENST00000560541 IGHV4-61A0A0C4DH41 118 aa8.48□□□□□ -1.05
CUX1-218ENST00000560541 F5H697 171 aa8.48□□□□□ -1.05
CUX1-218ENST00000560541 IGKV3-20P01619 116 aa8.48□□□□□ -1.05
CUX1-218ENST00000560541 RPL39P62891 51 aaKnown RBP8.48□□□□□ -1.05
CUX1-218ENST00000560541 DUX3Q96PT4 197 aa8.48□□□□□ -1.05
CUX1-218ENST00000560541 ZANQ9Y493 2812 aa8.47□□□□□ -1.05
CUX1-218ENST00000560541 FAM74A4Q5TZK3 123 aa8.47□□□□□ -1.05
CUX1-218ENST00000560541 TP53TG1Q9Y2A0 90 aa8.47□□□□□ -1.05
CUX1-218ENST00000560541 UCNP55089 124 aa8.47□□□□□ -1.05
CUX1-218ENST00000560541 SBSPONQ8IVN8 264 aa8.47□□□□□ -1.05
CUX1-218ENST00000560541 DSCR8Q96T75 97 aa8.47□□□□□ -1.05
CUX1-218ENST00000560541 TRAV12-3A0A0B4J271 114 aa8.46□□□□□ -1.05
CUX1-218ENST00000560541 CFAP46Q8IYW2 2715 aa8.46□□□□□ -1.06
CUX1-218ENST00000560541 hADV29S1A0JD25 119 aa8.46□□□□□ -1.06
CUX1-218ENST00000560541 C11orf86A6NJI1 115 aa8.46□□□□□ -1.06
CUX1-218ENST00000560541 TSHBP01222 138 aa8.46□□□□□ -1.06
CUX1-218ENST00000560541 CRYGDP07320 174 aa8.46□□□□□ -1.06
CUX1-218ENST00000560541 POLQO75417 2590 aa8.46□□□□□ -1.06
CUX1-218ENST00000560541 RPL35AP18077 110 aaKnown RBP8.45□□□□□ -1.06
CUX1-218ENST00000560541 HERVK_113P61574 105 aa8.45□□□□□ -1.06
CUX1-218ENST00000560541 FAM19A4Q96LR4 140 aa8.45□□□□□ -1.06
CUX1-218ENST00000560541 TRAV12-2A0A075B6T6 113 aa8.45□□□□□ -1.06
CUX1-218ENST00000560541 ZNF22P17026 224 aaPredicted RBP8.45□□□□□ -1.06
CUX1-218ENST00000560541 SUMO4Q6EEV6 95 aa8.45□□□□□ -1.06
CUX1-218ENST00000560541 NDUFA11Q86Y39 141 aa8.45□□□□□ -1.06
CUX1-218ENST00000560541 F8WDY8 70 aa8.44□□□□□ -1.06
CUX1-218ENST00000560541 LINC00315P59091 139 aa8.44□□□□□ -1.06
CUX1-218ENST00000560541 DAZ1Q9NQZ3 744 aaKnown RBP8.44□□□□□ -1.06
CUX1-218ENST00000560541 ZNF256Q9Y2P7 627 aaPredicted RBP8.44□□□□□ -1.06
CUX1-218ENST00000560541 OXTP01178 125 aa8.44□□□□□ -1.06
CUX1-218ENST00000560541 UBE2D1P51668 147 aa8.44□□□□□ -1.06
CUX1-218ENST00000560541 IGLV4-69A0A075B6H9 119 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 IGHG2P01859 326 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 NSUN5P1Q3KNT7 163 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 TMEM170BQ5T4T1 132 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 KIF25-AS1Q9Y6Z4 181 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 PKD1L2Q7Z442 2459 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 GNLYP22749 145 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 Q1RN00 199 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 C10orf99Q6UWK7 81 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 RNF152Q8N8N0 203 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 USMG5Q96IX5 58 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 OPRPNQ99935 248 aaPredicted RBP8.43□□□□□ -1.06
CUX1-218ENST00000560541 CYSTM1Q9H1C7 97 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 USP9XQ93008 2570 aaPredicted RBP8.43□□□□□ -1.06
CUX1-218ENST00000560541 SDHAF1A6NFY7 115 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 ELANEP08246 267 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 COX6B1P14854 86 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 SEC61GP60059 68 aa8.43□□□□□ -1.06
CUX1-218ENST00000560541 A0A1B0GX51 115 aa8.42□□□□□ -1.06
CUX1-218ENST00000560541 TSPEAR-AS2P59090 65 aa8.42□□□□□ -1.06
CUX1-218ENST00000560541 MYO18BQ8IUG5 2567 aa8.42□□□□□ -1.06
CUX1-218ENST00000560541 H3BMM0 161 aa8.42□□□□□ -1.06
CUX1-218ENST00000560541 UQCRQO14949 82 aa8.42□□□□□ -1.06
CUX1-218ENST00000560541 UBE2WQ96B02 151 aa8.42□□□□□ -1.06
CUX1-218ENST00000560541 IGIPA6NJ69 53 aa8.41□□□□□ -1.06
CUX1-218ENST00000560541 KLLNB2CW77 178 aa8.41□□□□□ -1.06
CUX1-218ENST00000560541 M0R2P5 195 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms