RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 UBE2D3P61077 147 aa9.91□□□□□ -0.82
SHMT2-222ENST00000555774 UBE2D2P62837 147 aa9.91□□□□□ -0.82
SHMT2-222ENST00000555774 RBMY1FQ15415 496 aaKnown RBP9.91□□□□□ -0.82
SHMT2-222ENST00000555774 DEFB104AQ8WTQ1 72 aa9.91□□□□□ -0.82
SHMT2-222ENST00000555774 LINC00467Q9BRT7 94 aa9.91□□□□□ -0.82
SHMT2-222ENST00000555774 IGLV4-3A0A075B6K6 122 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 H3BMM0 161 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 DEFB131AP59861 70 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 VCX2Q9H322 139 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 KNCNA6PVL3 124 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 M0R2P5 195 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 RHODO00212 210 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 ZNF22P17026 224 aaPredicted RBP9.9□□□□□ -0.82
SHMT2-222ENST00000555774 ATP6V0E2Q8NHE4 81 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 ZFHX3Q15911 3703 aa9.9□□□□□ -0.82
SHMT2-222ENST00000555774 AGRNO00468 2067 aa9.9□□□□□ -0.83
SHMT2-222ENST00000555774 PKD1L2Q7Z442 2459 aa9.89□□□□□ -0.83
SHMT2-222ENST00000555774 SLURP1P55000 103 aa9.89□□□□□ -0.83
SHMT2-222ENST00000555774 ZNF415Q09FC8 603 aa9.89□□□□□ -0.83
SHMT2-222ENST00000555774 BEX4Q9NWD9 120 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-222ENST00000555774 MAPK1IP1LQ8NDC0 245 aa9.89□□□□□ -0.83
SHMT2-222ENST00000555774 C4orf3Q8WVX3 66 aa9.89□□□□□ -0.83
SHMT2-222ENST00000555774 ETDBQ3ZM63 59 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 CFAP126Q5VTH2 177 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 LRRC75A-AS1Q8N1F1 130 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 OPRPNQ99935 248 aaPredicted RBP9.88□□□□□ -0.83
SHMT2-222ENST00000555774 TRBV20-1A0A075B6N2 111 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 APOMO95445 188 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 C10orf126Q8N4M7 172 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 DUX3Q96PT4 197 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 TNFRSF18Q9Y5U5 241 aa9.88□□□□□ -0.83
SHMT2-222ENST00000555774 RBMY1BA6NDE4 496 aaKnown RBP9.87□□□□□ -0.83
SHMT2-222ENST00000555774 RBMY1EA6NEQ0 496 aaKnown RBP9.87□□□□□ -0.83
SHMT2-222ENST00000555774 RBMY1DP0C7P1 496 aaKnown RBP9.87□□□□□ -0.83
SHMT2-222ENST00000555774 CFC1BP0CG36 223 aa9.87□□□□□ -0.83
SHMT2-222ENST00000555774 CFC1P0CG37 223 aa9.87□□□□□ -0.83
SHMT2-222ENST00000555774 CD28P10747 220 aa9.87□□□□□ -0.83
SHMT2-222ENST00000555774 SH2D6Q7Z4S9 175 aa9.87□□□□□ -0.83
SHMT2-222ENST00000555774 LOC107984156A0A0G2JMH3 177 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 TMEM238C9JI98 176 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 SCGB1A1P11684 91 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 MRPS36P82909 103 aaKnown RBP9.86□□□□□ -0.83
SHMT2-222ENST00000555774 ARL17AQ8IVW1 177 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 RAX2Q96IS3 184 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 DNAJC30Q96LL9 226 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 SPATA25Q9BR10 227 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 SPXQ9BT56 116 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 PRO1854Q9UHT4 67 aa9.86□□□□□ -0.83
SHMT2-222ENST00000555774 A0A0J9YXV3 536 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 TMEM61Q8N0U2 210 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 CLUHP3Q96NS8 147 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 MAP6D1Q9H9H5 199 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 SPANXA1Q9NS26 97 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 VPS13CQ709C8 3753 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 A0A0B4J2C4 111 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 PSMB2P49721 201 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 DEFB136Q30KP8 78 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 DEFB113Q30KQ7 82 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 C18orf65Q6ZTR6 163 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 DYNLRB2Q8TF09 96 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 C1QTNF4Q9BXJ3 329 aa9.85□□□□□ -0.83
SHMT2-222ENST00000555774 TSSC4Q9Y5U2 329 aaPredicted RBP9.85□□□□□ -0.83
SHMT2-222ENST00000555774 GAGE12HA6NDE8 117 aa9.84□□□□□ -0.83
SHMT2-222ENST00000555774 TMEM86BQ8N661 226 aa9.84□□□□□ -0.83
SHMT2-222ENST00000555774 SIGMAR1Q99720 223 aa9.84□□□□□ -0.83
SHMT2-222ENST00000555774 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.84□□□□□ -0.83
SHMT2-222ENST00000555774 BEAN1Q3B7T3 259 aa9.84□□□□□ -0.83
SHMT2-222ENST00000555774 INSP01308 110 aa9.83□□□□□ -0.84
SHMT2-222ENST00000555774 HTN1P15515 57 aa9.83□□□□□ -0.84
SHMT2-222ENST00000555774 FAM104AQ969W3 186 aa9.83□□□□□ -0.84
SHMT2-222ENST00000555774 IGHV3-73A0A0B4J1V6 119 aa9.83□□□□□ -0.84
SHMT2-222ENST00000555774 TINCRA0A1B0GVN0 87 aa9.83□□□□□ -0.84
SHMT2-222ENST00000555774 SMCPP49901 116 aaPredicted RBP9.83□□□□□ -0.84
SHMT2-222ENST00000555774 C11orf72Q8NBR9 251 aa9.83□□□□□ -0.84
SHMT2-222ENST00000555774 TIMM21Q9BVV7 248 aa9.83□□□□□ -0.84
SHMT2-222ENST00000555774 A4D1N5 150 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 IGHV3-53P01767 116 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 PROK1P58294 105 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 DEFB114Q30KQ6 69 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 SBSPONQ8IVN8 264 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 MTURNQ8N3F0 131 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 LINC01587Q99440 93 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 CHCHD7Q9BUK0 85 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 CACNA1AO00555 2505 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 A0A0J9YXY3 114 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 RS1O15537 224 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 IGHV3-30-3P0DP02 117 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 FOXI1Q12951 378 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 TEX29Q8N6K0 151 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 TMEM263Q8WUH6 116 aaKnown RBP9.82□□□□□ -0.84
SHMT2-222ENST00000555774 UBE2D4Q9Y2X8 147 aa9.82□□□□□ -0.84
SHMT2-222ENST00000555774 TRAV25A0A0B4J276 109 aa9.81□□□□□ -0.84
SHMT2-222ENST00000555774 IGHV1-58A0A0C4DH39 117 aa9.81□□□□□ -0.84
SHMT2-222ENST00000555774 TCL1BO95988 128 aa9.81□□□□□ -0.84
SHMT2-222ENST00000555774 CFAP46Q8IYW2 2715 aa9.81□□□□□ -0.84
SHMT2-222ENST00000555774 CELSR1Q9NYQ6 3014 aa9.8□□□□□ -0.84
SHMT2-222ENST00000555774 IGHV3-64A0A075B6Q5 118 aa9.8□□□□□ -0.84
SHMT2-222ENST00000555774 M0QXV9 152 aa9.8□□□□□ -0.84
SHMT2-222ENST00000555774 IGHV3-33P01772 117 aa9.8□□□□□ -0.84
SHMT2-222ENST00000555774 MUSTN1Q8IVN3 82 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 286.7 ms