RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 TOMM6Q96B49 74 aa4.46□□□□□ -1.7
VPS33B-203ENST00000554264 HIST1H4GQ99525 98 aa4.46□□□□□ -1.7
VPS33B-203ENST00000554264 MCRIP2Q9BUT9 160 aaKnown RBP4.46□□□□□ -1.7
VPS33B-203ENST00000554264 DPH3P1Q9H4G8 78 aa4.46□□□□□ -1.7
VPS33B-203ENST00000554264 SPANXB1Q9NS25 103 aaPredicted RBP4.46□□□□□ -1.7
VPS33B-203ENST00000554264 NHP2Q9NX24 153 aaKnown RBP4.46□□□□□ -1.7
VPS33B-203ENST00000554264 PKD1L1Q8TDX9 2849 aa4.46□□□□□ -1.7
VPS33B-203ENST00000554264 H3BUA1 57 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 RHODO00212 210 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 APELAP0DMC3 54 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 FXYD2P54710 66 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 SPANXN1Q5VSR9 72 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 VMO1Q7Z5L0 202 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 DLX4Q92988 240 aaPredicted RBP4.45□□□□□ -1.7
VPS33B-203ENST00000554264 TMEM141Q96I45 108 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 C18orf15Q96N68 181 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 CITED1Q99966 193 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 TP73-AS1Q9UF72 201 aa4.45□□□□□ -1.7
VPS33B-203ENST00000554264 TRBV7-3A0A075B6L6 115 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 TEX48A0A1B0GUV7 120 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 TMEM262E9PQX1 116 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 IGHG4P01861 327 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 ASIPP42127 132 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 ZNF80P51504 273 aaPredicted RBP4.44□□□□□ -1.7
VPS33B-203ENST00000554264 UBE2E1P51965 193 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 CRIP2P52943 208 aaPredicted RBP4.44□□□□□ -1.7
VPS33B-203ENST00000554264 KLRD1Q13241 179 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 C15orf32Q32M92 178 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 LCE1AQ5T7P2 110 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 GTSCR1Q86UQ5 136 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 DYNAPQ8N1N2 210 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 POM121L12Q8N7R1 296 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 NEXN-AS1Q8NBZ9 246 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 OR10J6PQ8NGY7 276 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 MPLKIPQ8TAP9 179 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 SCGB3A1Q96QR1 104 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 C1QTNF4Q9BXJ3 329 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 MRPL35Q9NZE8 188 aaKnown RBP4.44□□□□□ -1.7
VPS33B-203ENST00000554264 CYSLTR1Q9Y271 337 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 SMAD5-AS1Q9Y6J3 95 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 TRRAPQ9Y4A5 3859 aa4.44□□□□□ -1.7
VPS33B-203ENST00000554264 IGKV2D-26A0A0A0MRZ7 120 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 IGHV7-81A0A0B4J1V7 117 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 TRAV40A0A0B4J280 105 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 IGKV3D-20A0A0C4DH25 116 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 IGLV5-39A0A0G2JS06 123 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 IGHV7-4-1A0A0J9YVY3 117 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 CLPSL1A2RUU4 121 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 SMKR1H3BMG3 65 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 NXPH4O95158 308 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 NDUFA7O95182 113 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 ERCC8Q13216 396 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 LHFPL4Q7Z7J7 247 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 APRG1Q8IVJ8 170 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 Q8N9W7 124 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 Q8TAT8 98 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 TIMM17AQ99595 171 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 SPANXDQ9BXN6 97 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 AGPAT4-IT1Q9H0P7 198 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 MAP6D1Q9H9H5 199 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 MRPL16Q9NX20 251 aaKnown RBP4.43□□□□□ -1.7
VPS33B-203ENST00000554264 UFC1Q9Y3C8 167 aa4.43□□□□□ -1.7
VPS33B-203ENST00000554264 VWFP04275 2813 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 IGHV4OR15-8A0A075B7B6 117 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 A0A087WW49 117 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 NDUFA4O00483 81 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 APOMO95445 188 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 AZU1P20160 251 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 UBE2D1P51668 147 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 ATP5G2Q06055 141 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 TMEM86BQ8N661 226 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 PPDPFLQ8WWR9 84 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 USMG5Q96IX5 58 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 ODF3Q96PU9 254 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 PRO0461Q9UI25 63 aa4.42□□□□□ -1.7
VPS33B-203ENST00000554264 PRKDCP78527 4128 aaKnown RBP4.42□□□□□ -1.7
VPS33B-203ENST00000554264 NOTCH1P46531 2555 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 C11orf86A6NJI1 115 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 VCYO14598 125 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 PLXNB1O43157 2135 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 IGHV1-69P01742 117 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 IGHV4-38-2P0DP08 117 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 S100A4P26447 101 aaKnown RBP4.41□□□□□ -1.7
VPS33B-203ENST00000554264 CRYBA4P53673 196 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 UBE2D3P61077 147 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 UBE2D2P62837 147 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 NDPQ00604 133 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 SMAGPQ0VAQ4 97 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 SRSF9Q13242 221 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS33B-203ENST00000554264 RHOHQ15669 191 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 CFAP126Q5VTH2 177 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 C2orf66Q6UXQ4 117 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 SCGB1D4Q6XE38 83 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 LINC01600Q96MT4 127 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 KIR2DL4Q99706 377 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 SIRPDQ9H106 197 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 ZNF580Q9UK33 172 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 PHLDA3Q9Y5J5 127 aa4.41□□□□□ -1.7
VPS33B-203ENST00000554264 TSSC4Q9Y5U2 329 aaPredicted RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms