RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 A6NIN4 97 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 H3BQF6 201 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 SMIM6P0DI80 62 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 FGF7P21781 194 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 TDRG1Q3Y452 100 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 C9orf116Q5BN46 136 aaPredicted RBP0.41□□□□□ -2.34
VPS29-205ENST00000548539 PYY3Q5JQD4 70 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 C9orf62Q8N4C0 152 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 DPH3Q96FX2 82 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 BPESC1Q9GZL8 116 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 RPRMQ9NS64 109 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 V9GYV3 84 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 AKAP12Q02952 1782 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 ABCA4P78363 2273 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 NALCNQ8IZF0 1738 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 PSME4Q14997 1843 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 MYH8P13535 1937 aa0.4□□□□□ -2.34
VPS29-205ENST00000548539 KMT2DO14686 5537 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 DOCK1Q14185 1865 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 PLXNA1Q9UIW2 1896 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 KIAA0100Q14667 2235 aaKnown RBP0.4□□□□□ -2.35
VPS29-205ENST00000548539 MED13LQ71F56 2210 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 TRAV30A0A087WSZ9 112 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 C20orf202A1L168 122 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 OOSP1A8MZH6 123 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 M0R143 59 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 MT-ATP8P03928 68 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 HIST1H1DP16402 221 aaKnown RBP0.4□□□□□ -2.35
VPS29-205ENST00000548539 S100A10P60903 97 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 PKIAP61925 76 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 SELENOWP63302 87 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 HSD52Q0P140 79 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 CATR1Q13166 79 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 MEIG1Q5JSS6 88 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 S100A7L2Q5SY68 101 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.4□□□□□ -2.35
VPS29-205ENST00000548539 C1orf54Q8WWF1 131 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 PPP3R2Q96LZ3 170 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 Q96NJ1 140 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 ZNF518AQ6AHZ1 1483 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 MAGI1Q96QZ7 1491 aaPredicted RBP0.4□□□□□ -2.35
VPS29-205ENST00000548539 RAPGEF2Q9Y4G8 1499 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 DNMBPQ6XZF7 1577 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 ZNF142P52746 1687 aaPredicted RBP0.4□□□□□ -2.35
VPS29-205ENST00000548539 ROBO1Q9Y6N7 1651 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 MYO7AQ13402 2215 aa0.4□□□□□ -2.35
VPS29-205ENST00000548539 KIAA1551Q9HCM1 1747 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 C10orf142B7Z368 130 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 SNAPC5O75971 98 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 IFNA17P01571 189 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 APODP05090 189 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 S100A8P05109 93 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 NMBP08949 121 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 PI4KAP42356 2102 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 PPP3R1P63098 170 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 WHAMMP3Q1A5X7 153 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 MYO7BQ6PIF6 2116 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 PP6455Q8WZ26 134 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 ARL11Q969Q4 196 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 TMEM203Q969S6 136 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 SEC11CQ9BY50 192 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 NPVFQ9HCQ7 196 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 LINC00474Q9P2X8 69 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 LINC00312Q9Y6C7 94 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 DNAJC13O75165 2243 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 TMEM2Q9UHN6 1383 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 MED14O60244 1454 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 PZPP20742 1482 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 MRC2Q9UBG0 1479 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 WDR7Q9Y4E6 1490 aa0.39□□□□□ -2.35
VPS29-205ENST00000548539 RIMS1Q86UR5 1692 aaKnown RBP0.39□□□□□ -2.35
VPS29-205ENST00000548539 MUC22E2RYF6 1773 aaPredicted RBP0.39□□□□□ -2.35
VPS29-205ENST00000548539 ZNF609O15014 1411 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 KDM5DQ9BY66 1539 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 DCAF1Q9Y4B6 1507 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 MYH4Q9Y623 1939 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 ABCA1O95477 2261 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 KDM5AP29375 1690 aaKnown RBP0.38□□□□□ -2.35
VPS29-205ENST00000548539 QRICH2Q9H0J4 1663 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 GRIN2AQ12879 1464 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 TMEM218A2RU14 115 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 FAM25AB3EWG3 89 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 FAM25CB3EWG5 89 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 FAM25GB3EWG6 89 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 SNCGO76070 127 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 SPINK8P0C7L1 97 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 IGLC1P0CG04 106 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 AKAIN1P0CW23 69 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 PIPP12273 146 aaPredicted RBP0.38□□□□□ -2.35
VPS29-205ENST00000548539 ACYP2P14621 99 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 Q6AWC8 147 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 ALKAL2Q6UX46 152 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 KCNRGQ8N5I3 272 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 ACBD7Q8N6N7 88 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 SPTSSBQ8NFR3 76 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 SMIM11BQ8TCY0 68 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 SPTSSAQ969W0 71 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 C20orf78Q9BR46 151 aa0.38□□□□□ -2.35
VPS29-205ENST00000548539 TCEAL7Q9BRU2 100 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms