RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 NSUN5P1Q3KNT7 163 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 HIST1H4GQ99525 98 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 IGLV4-69A0A075B6H9 119 aa13.05□□□□□ -0.32
PTPN6-222ENST00000543744 RNASE8Q8TDE3 154 aaKnown RBP13.05□□□□□ -0.32
PTPN6-222ENST00000543744 ZNF469Q96JG9 3925 aaPredicted RBP13.05□□□□□ -0.32
PTPN6-222ENST00000543744 A0A1W2PPM0 123 aa13.05□□□□□ -0.32
PTPN6-222ENST00000543744 C11orf86A6NJI1 115 aa13.05□□□□□ -0.32
PTPN6-222ENST00000543744 I3L3M4 83 aa13.05□□□□□ -0.32
PTPN6-222ENST00000543744 CD300EQ496F6 205 aaPredicted RBP13.05□□□□□ -0.32
PTPN6-222ENST00000543744 NHP2Q9NX24 153 aaKnown RBP13.05□□□□□ -0.32
PTPN6-222ENST00000543744 GAGE12BA1L429 117 aa13.04□□□□□ -0.32
PTPN6-222ENST00000543744 K7EP34 96 aa13.04□□□□□ -0.32
PTPN6-222ENST00000543744 UFSP1Q6NVU6 142 aa13.04□□□□□ -0.32
PTPN6-222ENST00000543744 SPAG8Q99932 426 aaPredicted RBP13.04□□□□□ -0.32
PTPN6-222ENST00000543744 NBPF19A0A087WUL8 3843 aa13.03□□□□□ -0.32
PTPN6-222ENST00000543744 K7ERJ3 54 aa13.03□□□□□ -0.32
PTPN6-222ENST00000543744 EMP1P54849 157 aa13.03□□□□□ -0.32
PTPN6-222ENST00000543744 RAX2Q96IS3 184 aa13.03□□□□□ -0.32
PTPN6-222ENST00000543744 SCGB2A2Q13296 93 aa13.03□□□□□ -0.32
PTPN6-222ENST00000543744 SAMD5Q5TGI4 173 aa13.03□□□□□ -0.32
PTPN6-222ENST00000543744 M0R2P5 195 aa13.02□□□□□ -0.33
PTPN6-222ENST00000543744 PRM2P04554 102 aa13.02□□□□□ -0.33
PTPN6-222ENST00000543744 FABP2P12104 132 aa13.02□□□□□ -0.33
PTPN6-222ENST00000543744 HERVK_113P61574 105 aa13.02□□□□□ -0.33
PTPN6-222ENST00000543744 ZNF415Q09FC8 603 aa13.02□□□□□ -0.33
PTPN6-222ENST00000543744 IGHV3-73A0A0B4J1V6 119 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 ZNF815PA8K554 130 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 P0DMU3 169 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 FAM231AP0DMU4 169 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 FAM231CP0DMU5 169 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 HIST2H2BCQ6DN03 193 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 PHLDA1Q8WV24 401 aaPredicted RBP13.01□□□□□ -0.33
PTPN6-222ENST00000543744 EDA2RQ9HAV5 297 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 TRBV7-3A0A075B6L6 115 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 A8MWV9 139 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 C11orf44Q8N8P7 122 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 C20orf203Q8NBC4 194 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 LINC01587Q99440 93 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 SPCS1Q9Y6A9 102 aa13.01□□□□□ -0.33
PTPN6-222ENST00000543744 SONP18583 2426 aaKnown RBP13□□□□□ -0.33
PTPN6-222ENST00000543744 PIK3CD-AS1Q5SR53 167 aa13□□□□□ -0.33
PTPN6-222ENST00000543744 ESM1Q9NQ30 184 aa13□□□□□ -0.33
PTPN6-222ENST00000543744 A0A1W2PRX2 142 aa13□□□□□ -0.33
PTPN6-222ENST00000543744 AKAP9Q99996 3911 aa12.99□□□□□ -0.33
PTPN6-222ENST00000543744 INSP01308 110 aa12.99□□□□□ -0.33
PTPN6-222ENST00000543744 TMEM170BQ5T4T1 132 aa12.99□□□□□ -0.33
PTPN6-222ENST00000543744 SCGB1D4Q6XE38 83 aa12.99□□□□□ -0.33
PTPN6-222ENST00000543744 ZNRF2Q8NHG8 242 aa12.99□□□□□ -0.33
PTPN6-222ENST00000543744 FLNAP21333 2647 aaKnown RBP12.99□□□□□ -0.33
PTPN6-222ENST00000543744 CCDC168Q8NDH2 2452 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 TENM4Q6N022 2769 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 TRAV25A0A0B4J276 109 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 PROK1P58294 105 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 C12orf74Q32Q52 190 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 PTH2Q96A98 100 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 OPRPNQ99935 248 aaPredicted RBP12.98□□□□□ -0.33
PTPN6-222ENST00000543744 LINC00467Q9BRT7 94 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 CBY1Q9Y3M2 126 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 CCL24O00175 119 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 CD28P10747 220 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 FHL3Q13643 280 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 OR5A1Q8NGJ0 315 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 TNFRSF18Q9Y5U5 241 aa12.98□□□□□ -0.33
PTPN6-222ENST00000543744 ODF3L2Q3SX64 289 aa12.96□□□□□ -0.33
PTPN6-222ENST00000543744 C11orf72Q8NBR9 251 aa12.96□□□□□ -0.33
PTPN6-222ENST00000543744 CLUHP3Q96NS8 147 aa12.96□□□□□ -0.33
PTPN6-222ENST00000543744 RBX1P62877 108 aa12.96□□□□□ -0.34
PTPN6-222ENST00000543744 OCIAD2Q56VL3 154 aa12.96□□□□□ -0.34
PTPN6-222ENST00000543744 CFAP126Q5VTH2 177 aa12.96□□□□□ -0.34
PTPN6-222ENST00000543744 NFE4Q86UQ8 179 aa12.96□□□□□ -0.34
PTPN6-222ENST00000543744 PLEKHB2Q96CS7 222 aa12.96□□□□□ -0.34
PTPN6-222ENST00000543744 CHD6Q8TD26 2715 aa12.95□□□□□ -0.34
PTPN6-222ENST00000543744 SPXQ9BT56 116 aa12.95□□□□□ -0.34
PTPN6-222ENST00000543744 YAE1D1Q9NRH1 226 aa12.95□□□□□ -0.34
PTPN6-222ENST00000543744 IGLL5B9A064 214 aa12.95□□□□□ -0.34
PTPN6-222ENST00000543744 STHQ8IWL8 128 aa12.95□□□□□ -0.34
PTPN6-222ENST00000543744 VCX2Q9H322 139 aa12.95□□□□□ -0.34
PTPN6-222ENST00000543744 XCL2Q9UBD3 114 aa12.95□□□□□ -0.34
PTPN6-222ENST00000543744 SRSF9Q13242 221 aaKnown RBP eCLIP12.94□□□□□ -0.34
PTPN6-222ENST00000543744 Q6ZSN1 163 aa12.94□□□□□ -0.34
PTPN6-222ENST00000543744 CITED2Q99967 270 aaPredicted RBP12.94□□□□□ -0.34
PTPN6-222ENST00000543744 IGLV4-3A0A075B6K6 122 aa12.93□□□□□ -0.34
PTPN6-222ENST00000543744 A0A1B0GWB2 263 aa12.93□□□□□ -0.34
PTPN6-222ENST00000543744 RHODO00212 210 aa12.93□□□□□ -0.34
PTPN6-222ENST00000543744 KRTAP1-1Q07627 177 aa12.93□□□□□ -0.34
PTPN6-222ENST00000543744 MRPL16Q9NX20 251 aaKnown RBP12.93□□□□□ -0.34
PTPN6-222ENST00000543744 BEAN1Q3B7T3 259 aa12.93□□□□□ -0.34
PTPN6-222ENST00000543744 PYGO1Q9Y3Y4 419 aa12.93□□□□□ -0.34
PTPN6-222ENST00000543744 TSSC4Q9Y5U2 329 aaPredicted RBP12.93□□□□□ -0.34
PTPN6-222ENST00000543744 TSPEAR-AS2P59090 65 aa12.92□□□□□ -0.34
PTPN6-222ENST00000543744 ZNF479Q96JC4 524 aa12.92□□□□□ -0.34
PTPN6-222ENST00000543744 LINC01006Q8NI28 216 aa12.91□□□□□ -0.34
PTPN6-222ENST00000543744 Q9UF83 564 aa12.91□□□□□ -0.34
PTPN6-222ENST00000543744 NF1P21359 2839 aa12.91□□□□□ -0.34
PTPN6-222ENST00000543744 A0A0J9YY99 117 aa12.91□□□□□ -0.34
PTPN6-222ENST00000543744 TMEM238LA0A1B0GVL6 79 aa12.91□□□□□ -0.34
PTPN6-222ENST00000543744 A6NJY4 79 aa12.91□□□□□ -0.34
PTPN6-222ENST00000543744 J3QQQ9 107 aa12.91□□□□□ -0.34
PTPN6-222ENST00000543744 RNASE1P07998 156 aaKnown RBP12.91□□□□□ -0.34
PTPN6-222ENST00000543744 RNF151Q2KHN1 245 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms