RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 IL18Q14116 193 aa2.88□□□□□ -1.95
LIMS1-214ENST00000542845 KIAA1644Q3SXP7 199 aa2.88□□□□□ -1.95
LIMS1-214ENST00000542845 TMEM128Q5BJH2 165 aa2.88□□□□□ -1.95
LIMS1-214ENST00000542845 C1orf137Q5JT78 98 aa2.88□□□□□ -1.95
LIMS1-214ENST00000542845 GOLT1AQ6ZVE7 132 aa2.88□□□□□ -1.95
LIMS1-214ENST00000542845 CMTM2Q8TAZ6 248 aa2.88□□□□□ -1.95
LIMS1-214ENST00000542845 LENEPQ9Y5L5 61 aa2.88□□□□□ -1.95
LIMS1-214ENST00000542845 IGKV3OR2-268A0A0C4DH90 116 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 UBE2L5PA0A1B0GUS4 154 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 SFT2D2O95562 160 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 RNASE3P12724 160 aaKnown RBP2.87□□□□□ -1.95
LIMS1-214ENST00000542845 FGF7P21781 194 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 RPL29P47914 159 aaKnown RBP2.87□□□□□ -1.95
LIMS1-214ENST00000542845 FHITP49789 147 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 ZNF80P51504 273 aaPredicted RBP2.87□□□□□ -1.95
LIMS1-214ENST00000542845 SSBP1Q04837 148 aaKnown RBP2.87□□□□□ -1.95
LIMS1-214ENST00000542845 PPP1R1AQ13522 171 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 SPANXN2Q5MJ10 180 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.87□□□□□ -1.95
LIMS1-214ENST00000542845 FER1L6-AS1Q8NA97 138 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 OR10G8Q8NGN5 311 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 MCFD2Q8NI22 146 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 SUN5Q8TC36 379 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 DIRC1Q969H9 104 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 FXYD5Q96DB9 178 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 TVP23CQ96ET8 276 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 DIRAS2Q96HU8 199 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 GGACTQ9BVM4 153 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 UQCC1Q9NVA1 299 aa2.87□□□□□ -1.95
LIMS1-214ENST00000542845 TRBV7-3A0A075B6L6 115 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 ANKRD20A5PA0PJZ0 165 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 C7orf66A4D0T2 115 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 GCGP01275 180 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 UBE2D3P61077 147 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 UBE2D2P62837 147 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 MRPS10P82664 201 aaKnown RBP2.86□□□□□ -1.95
LIMS1-214ENST00000542845 CYCSP99999 105 aaKnown RBP2.86□□□□□ -1.95
LIMS1-214ENST00000542845 IAH1Q2TAA2 248 aaPredicted RBP2.86□□□□□ -1.95
LIMS1-214ENST00000542845 UFSP1Q6NVU6 142 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 SMIM4Q8WVI0 70 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 AP3S1Q92572 193 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 PTH2Q96A98 100 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 FAM167A-AS1Q96KT0 104 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 RETNLBQ9BQ08 111 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 NDFIP1Q9BT67 221 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 SLIRPQ9GZT3 109 aaKnown RBP2.86□□□□□ -1.95
LIMS1-214ENST00000542845 VCX3BQ9H321 246 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 PRR34Q9NV39 138 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 RAB26Q9ULW5 256 aa2.86□□□□□ -1.95
LIMS1-214ENST00000542845 LSM5Q9Y4Y9 91 aaKnown RBP2.86□□□□□ -1.95
LIMS1-214ENST00000542845 IGLV1-50A0A075B6I6 118 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 GRIFINA4D1Z8 144 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 M0R381 172 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 EIF3GO75821 320 aaKnown RBP eCLIP2.85□□□□□ -1.95
LIMS1-214ENST00000542845 SULT1A2P50226 295 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 TAS2R30P59541 319 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 RAB2AP61019 212 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 PKIAP61925 76 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 GNG5P63218 68 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 EIF5AP63241 154 aaKnown RBP2.85□□□□□ -1.95
LIMS1-214ENST00000542845 UBE2L3P68036 154 aaKnown RBP2.85□□□□□ -1.95
LIMS1-214ENST00000542845 FAM74A1Q5RGS3 127 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 C15orf56Q8N910 161 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 LINC00526Q96FQ7 95 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 PRAC1Q96KF2 57 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 DERL1Q9BUN8 251 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 MIXL1Q9H2W2 232 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 VCX2Q9H322 139 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 LINC00474Q9P2X8 69 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 MUC17Q685J3 4493 aa2.85□□□□□ -1.95
LIMS1-214ENST00000542845 TRAV8-4A0A0B4J246 113 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 C9orf170A2RU37 121 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 H0Y9J4 135 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 H3BVH4 76 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 P01737 135 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 IGLV7-43P04211 117 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 ARMS2P0C7Q2 107 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 CRYGAP11844 174 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 ZNF56Q15929 161 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 ZFP69Q49AA0 526 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 SMUG1Q53HV7 270 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 NTM-AS1Q6ZSK4 140 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 PHF5AQ7RTV0 110 aaKnown RBP2.84□□□□□ -1.95
LIMS1-214ENST00000542845 PRNTQ86SH4 94 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 LYRM2Q9NU23 88 aaPredicted RBP2.84□□□□□ -1.95
LIMS1-214ENST00000542845 OR5AC2Q9NZP5 309 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 MBD2Q9UBB5 411 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 PHLDA3Q9Y5J5 127 aa2.84□□□□□ -1.95
LIMS1-214ENST00000542845 IGLV4-60A0A075B6I1 120 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 TRBV25-1A0A075B6N4 114 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 IGKV3D-20A0A0C4DH25 116 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 TRBV10-1A0A0K0K1A3 114 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 A0A1W2PNN7 141 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 FAM25EA8MYX2 175 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 B4DEV8 164 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 GZMBP10144 247 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 S100A11P31949 105 aa2.83□□□□□ -1.96
LIMS1-214ENST00000542845 FAUP35544 74 aaKnown RBP2.83□□□□□ -1.96
LIMS1-214ENST00000542845 RPL13AP40429 203 aaKnown RBP2.83□□□□□ -1.96
LIMS1-214ENST00000542845 DEFA3P59666 94 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms