RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TNFRSF18Q9Y5U5 241 aa9.65□□□□□ -0.86
SFSWAP-209ENST00000540469 POLR2KP53803 58 aaKnown RBP9.65□□□□□ -0.87
SFSWAP-209ENST00000540469 ODF3Q96PU9 254 aa9.65□□□□□ -0.87
SFSWAP-209ENST00000540469 UNQ9165/PRO28630Q6UXU0 137 aa9.64□□□□□ -0.87
SFSWAP-209ENST00000540469 LOC107984640A0A0U1RRK4 108 aa9.64□□□□□ -0.87
SFSWAP-209ENST00000540469 GRNP28799 593 aaKnown RBP9.64□□□□□ -0.87
SFSWAP-209ENST00000540469 ZNF580Q9UK33 172 aa9.64□□□□□ -0.87
SFSWAP-209ENST00000540469 CLEC2BQ92478 149 aa9.64□□□□□ -0.87
SFSWAP-209ENST00000540469 TIMM21Q9BVV7 248 aa9.64□□□□□ -0.87
SFSWAP-209ENST00000540469 VPREB3Q9UKI3 123 aa9.64□□□□□ -0.87
SFSWAP-209ENST00000540469 MUC4Q99102 2169 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 TRAV8-3A0A0A6YYJ7 113 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 TMEM223A0PJW6 202 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 LGALS9O00182 355 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 MED14OSP0DP75 135 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 SAA4P35542 130 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 SORL1Q92673 2214 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 ITLN2Q8WWU7 325 aaPredicted RBP9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 ICOSQ9Y6W8 199 aa9.63□□□□□ -0.87
SFSWAP-209ENST00000540469 IGHV3OR16-10A0A075B7F0 116 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 A0A0J9YXY3 114 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 ZNF22P17026 224 aaPredicted RBP9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 UBE2E1P51965 193 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 EBI3Q14213 229 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 Q6Q795 121 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 AMELXQ99217 191 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 TRAV41A0A0B4J266 112 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 EIF4EBP3O60516 100 aaPredicted RBP9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 IGHV4OR15-8A0A075B7B6 117 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 A0A087WW49 117 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 TRBV12-3P01733 135 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 CD28P10747 220 aa9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 PRRC2AP48634 2157 aaKnown RBP9.62□□□□□ -0.87
SFSWAP-209ENST00000540469 RNASE13Q5GAN3 156 aaKnown RBP9.61□□□□□ -0.87
SFSWAP-209ENST00000540469 U3KQE9 123 aa9.61□□□□□ -0.87
SFSWAP-209ENST00000540469 TRBV30A0A0K0K1B3 111 aa9.61□□□□□ -0.87
SFSWAP-209ENST00000540469 ZFP36P26651 326 aaKnown RBP9.61□□□□□ -0.87
SFSWAP-209ENST00000540469 UBTD1Q9HAC8 227 aa9.61□□□□□ -0.87
SFSWAP-209ENST00000540469 IGHV3-30-3P0DP02 117 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 HTN1P15515 57 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 H7C423 109 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 PF4V1P10720 104 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 Q6ZSV7 163 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 KLK5Q9Y337 293 aaPredicted RBP9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 TRBV27A0A0K0K1C4 114 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 LINC00315P59091 139 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 TMEM101Q96IK0 257 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 RHPN1-AS1Q9BWJ2 59 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 NDUFA12Q9UI09 145 aa9.6□□□□□ -0.87
SFSWAP-209ENST00000540469 FAM208BQ5VWN6 2430 aa9.59□□□□□ -0.87
SFSWAP-209ENST00000540469 KIF25-AS1Q9Y6Z4 181 aa9.59□□□□□ -0.87
SFSWAP-209ENST00000540469 MAP1AP78559 2803 aaPredicted RBP9.59□□□□□ -0.87
SFSWAP-209ENST00000540469 TRGV11A0A075B6L2 103 aa9.59□□□□□ -0.87
SFSWAP-209ENST00000540469 TRAV12-2A0A075B6T6 113 aa9.59□□□□□ -0.87
SFSWAP-209ENST00000540469 SPANXA1Q9NS26 97 aa9.59□□□□□ -0.87
SFSWAP-209ENST00000540469 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.59□□□□□ -0.871e-11■■■■□ 22.7
SFSWAP-209ENST00000540469 FAM236AA0A1B0GUQ0 79 aa9.59□□□□□ -0.88
SFSWAP-209ENST00000540469 FAM236BA0A1B0GV22 79 aa9.59□□□□□ -0.88
SFSWAP-209ENST00000540469 H3BT86 120 aa9.59□□□□□ -0.88
SFSWAP-209ENST00000540469 MYO18BQ8IUG5 2567 aa9.58□□□□□ -0.88
SFSWAP-209ENST00000540469 IGHV1-69P01742 117 aa9.58□□□□□ -0.88
SFSWAP-209ENST00000540469 SPG11Q96JI7 2443 aa9.58□□□□□ -0.88
SFSWAP-209ENST00000540469 RHOHQ15669 191 aa9.58□□□□□ -0.88
SFSWAP-209ENST00000540469 IGHV3-73A0A0B4J1V6 119 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 C20orf203Q8NBC4 194 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 A0A0U1RRA0 63 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 LINC00694P0DN24 101 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 DAND5Q8N907 189 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 KLK9Q9UKQ9 250 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 FAM223BA6NKX1 122 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 NDUFA4O00483 81 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 FAM223AQ8IWN6 122 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 MDFICQ9P1T7 246 aa9.57□□□□□ -0.88
SFSWAP-209ENST00000540469 CENPEQ02224 2701 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 I3L3M4 83 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 LY6EQ16553 131 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 CEMP1Q6PRD7 247 aaPredicted RBP9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 IGLV4-3A0A075B6K6 122 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 CCL21O00585 134 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 C9orf153Q5TBE3 101 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 Q8NA96 180 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 A8MZ25 164 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 DUX5Q96PT3 197 aa9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 ASH1LQ9NR48 2969 aaKnown RBP9.56□□□□□ -0.88
SFSWAP-209ENST00000540469 ITPR1Q14643 2758 aa9.55□□□□□ -0.88
SFSWAP-209ENST00000540469 C5orf56Q8N8D9 126 aa9.55□□□□□ -0.88
SFSWAP-209ENST00000540469 NSUN5P1Q3KNT7 163 aa9.55□□□□□ -0.88
SFSWAP-209ENST00000540469 SIRPDQ9H106 197 aa9.55□□□□□ -0.88
SFSWAP-209ENST00000540469 M0QY20 66 aa9.55□□□□□ -0.88
SFSWAP-209ENST00000540469 LY6DQ14210 128 aa9.55□□□□□ -0.88
SFSWAP-209ENST00000540469 ADAMTSL4-AS1Q5T5F5 129 aa9.55□□□□□ -0.88
SFSWAP-209ENST00000540469 BSNQ9UPA5 3926 aa9.54□□□□□ -0.88
SFSWAP-209ENST00000540469 NPFFO15130 113 aa9.54□□□□□ -0.88
SFSWAP-209ENST00000540469 NXPH4O95158 308 aa9.54□□□□□ -0.88
SFSWAP-209ENST00000540469 MOB4Q9Y3A3 225 aa9.54□□□□□ -0.88
SFSWAP-209ENST00000540469 DCHS2Q6V1P9 2916 aa9.54□□□□□ -0.88
SFSWAP-209ENST00000540469 TRBV6-5A0A0K0K1A5 114 aa9.54□□□□□ -0.88
SFSWAP-209ENST00000540469 SOCS3O14543 225 aa9.54□□□□□ -0.88
SFSWAP-209ENST00000540469 TMEM126AQ9H061 195 aa9.53□□□□□ -0.88
SFSWAP-209ENST00000540469 NACAE9PAV3 2078 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms