RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 C20orf203Q8NBC4 194 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 CCL17Q92583 94 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 EEF1AKMT3Q96AZ1 226 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 C2orf48Q96LS8 159 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 TIMM21Q9BVV7 248 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 PRORYQ9H606 182 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 UBTD1Q9HAC8 227 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 WDR87Q6ZQQ6 2873 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 CLPSL1A2RUU4 121 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 B9A039 149 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 I3L3M4 83 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 TGFAP01135 160 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 IGHV3-30-3P0DP02 117 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 ATP5J2P56134 94 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 Q6JHZ5 121 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 IGFL3Q6UXB1 125 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 SERP2Q8N6R1 65 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 DUX3Q96PT4 197 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 LINC00527Q9UJ94 153 aa4.97□□□□□ -1.61
USP28-207ENST00000538475 TINCRA0A1B0GVN0 87 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 FAM223BA6NKX1 122 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 H7C2G1 150 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 NDUFC2O95298 119 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 RNASE3P12724 160 aaKnown RBP4.96□□□□□ -1.62
USP28-207ENST00000538475 RPL18AQ02543 176 aaKnown RBP4.96□□□□□ -1.62
USP28-207ENST00000538475 S100A7L2Q5SY68 101 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 SUMO4Q6EEV6 95 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 FAM223AQ8IWN6 122 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 TMEM105Q8N8V8 129 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 DPH3Q96FX2 82 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 UNC80Q8N2C7 3258 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 CEP290O15078 2479 aa4.96□□□□□ -1.62
USP28-207ENST00000538475 A0A1W2PNU3 283 aaPredicted RBP4.95□□□□□ -1.62
USP28-207ENST00000538475 KLLNB2CW77 178 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 UCNP55089 124 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 TIRAPP58753 221 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 PIK3CD-AS1Q5SR53 167 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 VSIG2Q96IQ7 327 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 NDUFA12Q9UI09 145 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 FAM215AQ9Y5M1 114 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 POLEQ07864 2286 aa4.95□□□□□ -1.62
USP28-207ENST00000538475 IGLV4-3A0A075B6K6 122 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 IGHV7-81A0A0B4J1V7 117 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 K7ENP7 123 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 NDUFA4O00483 81 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 SOCS3O14543 225 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 NDUFA1O15239 70 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 PRSS2P07478 247 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 COX7A1P24310 79 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 ZFP36P26651 326 aaKnown RBP4.94□□□□□ -1.62
USP28-207ENST00000538475 C15orf32Q32M92 178 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 BEAN1Q3B7T3 259 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 ATP5EP2Q5VTU8 51 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 RNF152Q8N8N0 203 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 C9orf85Q96MD7 179 aa4.94□□□□□ -1.62
USP28-207ENST00000538475 BEX4Q9NWD9 120 aaPredicted RBP4.94□□□□□ -1.62
USP28-207ENST00000538475 IGLV5-45A0A087WSX0 123 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 TRAV8-3A0A0A6YYJ7 113 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 H3BUA1 57 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 M0QY20 66 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 BAALC-AS2P0C853 105 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 RPL39P62891 51 aaKnown RBP4.93□□□□□ -1.62
USP28-207ENST00000538475 BSPH1Q075Z2 132 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 PRR9Q5T870 116 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 FDCSPQ8NFU4 85 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 MAFAQ8NHW3 353 aaPredicted RBP4.93□□□□□ -1.62
USP28-207ENST00000538475 DNAH14Q0VDD8 3507 aa4.93□□□□□ -1.62
USP28-207ENST00000538475 MKI67P46013 3256 aaKnown RBP4.92□□□□□ -1.62
USP28-207ENST00000538475 A0A0J9YXV3 536 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 TRBV10-3A0A0K0K1G6 114 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 F5H697 171 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 H0YGX0 51 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 PSMB8P28062 276 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 NDPQ00604 133 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 FAM27E3Q08E93 113 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 CEMP1Q6PRD7 247 aaPredicted RBP4.92□□□□□ -1.62
USP28-207ENST00000538475 FAM19A3Q7Z5A8 133 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 Q8N9W7 124 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 CLEC2BQ92478 149 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 UPK3BQ9BT76 320 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 TECTAO75443 2155 aa4.92□□□□□ -1.62
USP28-207ENST00000538475 TPRP12270 2363 aaKnown RBP4.91□□□□□ -1.62
USP28-207ENST00000538475 TRAV13-2A0A0B4J235 113 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 LOC107984640A0A0U1RRK4 108 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 F5H768 121 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 DAZ2Q13117 558 aaKnown RBP4.91□□□□□ -1.62
USP28-207ENST00000538475 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 VMO1Q7Z5L0 202 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 DAZ4Q86SG3 579 aaKnown RBP4.91□□□□□ -1.62
USP28-207ENST00000538475 SMCR5Q8TEV8 140 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 OBSCN-AS1Q96MR7 158 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 DAZ1Q9NQZ3 744 aaKnown RBP4.91□□□□□ -1.62
USP28-207ENST00000538475 DAZ3Q9NR90 486 aaKnown RBP4.91□□□□□ -1.62
USP28-207ENST00000538475 S4R3C0 116 aa4.91□□□□□ -1.62
USP28-207ENST00000538475 PKDREJQ9NTG1 2253 aa4.9□□□□□ -1.62
USP28-207ENST00000538475 REV3LO60673 3130 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 LAMA2P24043 3122 aaKnown RBP4.9□□□□□ -1.63
USP28-207ENST00000538475 TRAV13-1A0A0B4J241 112 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 hADV29S1A0JD25 119 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 EPM2AB3EWF7 344 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms