RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 LOC389332A0A1B0GUA5 103 aa11.28□□□□□ -0.6
TRIM3-213ENST00000533309 PRSS47A8MTI9 375 aa11.28□□□□□ -0.6
TRIM3-213ENST00000533309 CIDEAO60543 219 aa11.28□□□□□ -0.6
TRIM3-213ENST00000533309 FHL2Q14192 279 aa11.28□□□□□ -0.6
TRIM3-213ENST00000533309 MAP1LC3AQ9H492 121 aa11.28□□□□□ -0.6
TRIM3-213ENST00000533309 IGLV2-18A0A075B6J9 118 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 A0A0J9YWU9 116 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 TRBV6-5A0A0K0K1A5 114 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 H7C1H1 209 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 PPP1R17O96001 155 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 IFI27P40305 119 aaPredicted RBP11.27□□□□□ -0.6
TRIM3-213ENST00000533309 DAD1P61803 113 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 SUMO2P61956 95 aaKnown RBP11.27□□□□□ -0.6
TRIM3-213ENST00000533309 C20orf78Q9BR46 151 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 NIT2Q9NQR4 276 aa11.27□□□□□ -0.6
TRIM3-213ENST00000533309 HOXA5P20719 270 aa11.27□□□□□ -0.61
TRIM3-213ENST00000533309 NIT1Q86X76 327 aa11.27□□□□□ -0.61
TRIM3-213ENST00000533309 SLC25A29Q8N8R3 303 aa11.27□□□□□ -0.61
TRIM3-213ENST00000533309 TEX48A0A1B0GUV7 120 aa11.26□□□□□ -0.61
TRIM3-213ENST00000533309 ESDP10768 282 aa11.26□□□□□ -0.61
TRIM3-213ENST00000533309 DEFA6Q01524 100 aa11.26□□□□□ -0.61
TRIM3-213ENST00000533309 SMIM2Q9BVW6 85 aa11.26□□□□□ -0.61
TRIM3-213ENST00000533309 TRGV4A0A0C4DH28 118 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 K7EQD1 137 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 POLR2KP53803 58 aaKnown RBP11.25□□□□□ -0.61
TRIM3-213ENST00000533309 C12orf74Q32Q52 190 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 RNASEKQ6P5S7 137 aaKnown RBP11.25□□□□□ -0.61
TRIM3-213ENST00000533309 HIST3H2BBQ8N257 126 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 NEXN-AS1Q8NBZ9 246 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 PRSS3P2Q8NHM4 247 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 TMEM70Q9BUB7 260 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 ST20Q9HBF5 79 aa11.25□□□□□ -0.61
TRIM3-213ENST00000533309 TRBV6-4A0A1B0GX49 114 aa11.24□□□□□ -0.61
TRIM3-213ENST00000533309 SDHAF1A6NFY7 115 aa11.24□□□□□ -0.61
TRIM3-213ENST00000533309 LINC00614P0C842 121 aa11.24□□□□□ -0.61
TRIM3-213ENST00000533309 RPL32P62910 135 aaKnown RBP11.24□□□□□ -0.61
TRIM3-213ENST00000533309 PDZD11Q5EBL8 140 aa11.24□□□□□ -0.61
TRIM3-213ENST00000533309 ZMAT4Q9H898 229 aa11.24□□□□□ -0.61
TRIM3-213ENST00000533309 NXT2Q9NPJ8 142 aaKnown RBP11.24□□□□□ -0.61
TRIM3-213ENST00000533309 LINC01546A6NGU7 62 aa11.24□□□□□ -0.61
TRIM3-213ENST00000533309 Q8N8P6 123 aa11.24□□□□□ -0.61
TRIM3-213ENST00000533309 CHCHD1Q96BP2 118 aaKnown RBP11.24□□□□□ -0.61
TRIM3-213ENST00000533309 TRBV10-1A0A0K0K1A3 114 aa11.23□□□□□ -0.61
TRIM3-213ENST00000533309 IFITM10A6NMD0 228 aa11.23□□□□□ -0.61
TRIM3-213ENST00000533309 ATP5G1P05496 136 aa11.23□□□□□ -0.61
TRIM3-213ENST00000533309 PMCHP20382 165 aa11.23□□□□□ -0.61
TRIM3-213ENST00000533309 FA2HQ7L5A8 372 aa11.23□□□□□ -0.61
TRIM3-213ENST00000533309 NEGR1Q7Z3B1 354 aa11.23□□□□□ -0.61
TRIM3-213ENST00000533309 AP5S1Q9NUS5 200 aa11.23□□□□□ -0.61
TRIM3-213ENST00000533309 TRBV27A0A0K0K1C4 114 aa11.22□□□□□ -0.61
TRIM3-213ENST00000533309 DNAJC30Q96LL9 226 aa11.22□□□□□ -0.61
TRIM3-213ENST00000533309 LOC100131303A0A0U1RQF7 123 aa11.21□□□□□ -0.61
TRIM3-213ENST00000533309 HSBP1O75506 76 aa11.21□□□□□ -0.61
TRIM3-213ENST00000533309 CRYBA4P53673 196 aa11.21□□□□□ -0.61
TRIM3-213ENST00000533309 RHOHQ15669 191 aa11.21□□□□□ -0.61
TRIM3-213ENST00000533309 HHLA3Q9XRX5 114 aa11.21□□□□□ -0.61
TRIM3-213ENST00000533309 FBN3Q75N90 2809 aa11.21□□□□□ -0.61
TRIM3-213ENST00000533309 FAM19A2Q8N3H0 131 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 TNFRSF18Q9Y5U5 241 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 A0A096LNJ9 63 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 IGHV1-24A0A0C4DH33 117 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 VCYO14598 125 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 TCAPO15273 167 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 PMCHL1Q16048 86 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 Q6ZTC4 211 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 HIST1H2BLQ99880 126 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 PRO0255Q9UI72 69 aa11.2□□□□□ -0.62
TRIM3-213ENST00000533309 TRBV7-3A0A075B6L6 115 aa11.19□□□□□ -0.62
TRIM3-213ENST00000533309 LOC105371267A0A1B0GV96 52 aa11.19□□□□□ -0.62
TRIM3-213ENST00000533309 LINC00694P0DN24 101 aa11.19□□□□□ -0.62
TRIM3-213ENST00000533309 NANOS2P60321 138 aaKnown RBP11.19□□□□□ -0.62
TRIM3-213ENST00000533309 ZNRF2Q8NHG8 242 aa11.19□□□□□ -0.62
TRIM3-213ENST00000533309 C11orf45Q8TAV5 145 aa11.19□□□□□ -0.62
TRIM3-213ENST00000533309 DEFB104AQ8WTQ1 72 aa11.19□□□□□ -0.62
TRIM3-213ENST00000533309 VSIG2Q96IQ7 327 aa11.19□□□□□ -0.62
TRIM3-213ENST00000533309 GAGE12JA6NER3 117 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 HTN3P15516 51 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 AMTP48728 403 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 UBE2D3P61077 147 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 UBE2D2P62837 147 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 RPL36AP83881 106 aaKnown RBP11.18□□□□□ -0.62
TRIM3-213ENST00000533309 GAGE1Q13065 139 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 GAGE4Q13068 117 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 GAGE5Q13069 117 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 GAGE13Q4V321 117 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 RPL36ALQ969Q0 106 aaKnown RBP11.18□□□□□ -0.62
TRIM3-213ENST00000533309 PRADC1Q9BSG0 188 aa11.18□□□□□ -0.62
TRIM3-213ENST00000533309 F5H768 121 aa11.17□□□□□ -0.62
TRIM3-213ENST00000533309 TSHBP01222 138 aa11.17□□□□□ -0.62
TRIM3-213ENST00000533309 I3L3M4 83 aa11.17□□□□□ -0.62
TRIM3-213ENST00000533309 K7EMI3 77 aa11.17□□□□□ -0.62
TRIM3-213ENST00000533309 NHLRC4P0CG21 123 aaPredicted RBP11.17□□□□□ -0.62
TRIM3-213ENST00000533309 S100A2P29034 98 aa11.17□□□□□ -0.62
TRIM3-213ENST00000533309 LAGE3Q14657 143 aa11.17□□□□□ -0.62
TRIM3-213ENST00000533309 PHLDA1Q8WV24 401 aaPredicted RBP11.17□□□□□ -0.62
TRIM3-213ENST00000533309 KIR2DL4Q99706 377 aa11.17□□□□□ -0.62
TRIM3-213ENST00000533309 TRAV26-1A0A087WT03 109 aa11.16□□□□□ -0.62
TRIM3-213ENST00000533309 IGHV3-38A0A0C4DH36 116 aa11.16□□□□□ -0.62
TRIM3-213ENST00000533309 PAX4O43316 350 aa11.16□□□□□ -0.62
TRIM3-213ENST00000533309 FABP4P15090 132 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms