RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MT-ATP8P03928 68 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 SPINK8P0C7L1 97 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 CRYBA4P53673 196 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 PTH2Q96A98 100 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 SORL1Q92673 2214 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 LOC107984156A0A0G2JMH3 177 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 TMEM89A2RUT3 159 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 SYNJ2BPP57105 145 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 NSUN5P1Q3KNT7 163 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 ARL17AQ8IVW1 177 aa14.24□□□□□ -0.13
VPS28-213ENST00000530983 CACNA1AO00555 2505 aa14.23□□□□□ -0.13
VPS28-213ENST00000530983 ZNF418Q8TF45 676 aaPredicted RBP14.23□□□□□ -0.13
VPS28-213ENST00000530983 AMELXQ99217 191 aa14.23□□□□□ -0.13
VPS28-213ENST00000530983 OPRPNQ99935 248 aaPredicted RBP14.23□□□□□ -0.13
VPS28-213ENST00000530983 DOPEY2Q9Y3R5 2298 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 ZANQ9Y493 2812 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 P0DMU3 169 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 FAM231AP0DMU4 169 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 FAM231CP0DMU5 169 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 XGP55808 180 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 UBE2D3P61077 147 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 UBE2D2P62837 147 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 TRPT1Q86TN4 253 aaKnown RBP14.22□□□□□ -0.13
VPS28-213ENST00000530983 CARD19Q96LW7 228 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 PIEZO1Q92508 2521 aa14.22□□□□□ -0.13
VPS28-213ENST00000530983 RHOHQ15669 191 aa14.21□□□□□ -0.13
VPS28-213ENST00000530983 Q6ZUT4 128 aa14.21□□□□□ -0.13
VPS28-213ENST00000530983 IGHV3-30P01768 117 aa14.2□□□□□ -0.14
VPS28-213ENST00000530983 IGHV3-30-5P0DP03 117 aa14.2□□□□□ -0.14
VPS28-213ENST00000530983 SLC25A29Q8N8R3 303 aa14.2□□□□□ -0.14
VPS28-213ENST00000530983 DUX5Q96PT3 197 aa14.2□□□□□ -0.14
VPS28-213ENST00000530983 J3QQQ9 107 aa14.2□□□□□ -0.14
VPS28-213ENST00000530983 NDUFA11Q86Y39 141 aa14.2□□□□□ -0.14
VPS28-213ENST00000530983 LINC01356Q8N9X3 169 aa14.19□□□□□ -0.14
VPS28-213ENST00000530983 IGSF10Q6WRI0 2623 aa14.18□□□□□ -0.14
VPS28-213ENST00000530983 C20orf203Q8NBC4 194 aa14.18□□□□□ -0.14
VPS28-213ENST00000530983 HOXD3P31249 432 aaPredicted RBP14.18□□□□□ -0.14
VPS28-213ENST00000530983 LYRM7Q5U5X0 104 aa14.18□□□□□ -0.14
VPS28-213ENST00000530983 RNF152Q8N8N0 203 aa14.18□□□□□ -0.14
VPS28-213ENST00000530983 PPDPFLQ8WWR9 84 aa14.18□□□□□ -0.14
VPS28-213ENST00000530983 A0A096LNT2 108 aa14.17□□□□□ -0.14
VPS28-213ENST00000530983 TCL1BO95988 128 aa14.17□□□□□ -0.14
VPS28-213ENST00000530983 CFC1BP0CG36 223 aa14.17□□□□□ -0.14
VPS28-213ENST00000530983 CFC1P0CG37 223 aa14.17□□□□□ -0.14
VPS28-213ENST00000530983 RBMY1A1P0DJD3 496 aaKnown RBP14.17□□□□□ -0.14
VPS28-213ENST00000530983 RBMY1CP0DJD4 496 aa14.17□□□□□ -0.14
VPS28-213ENST00000530983 RBMY1FQ15415 496 aaKnown RBP14.17□□□□□ -0.14
VPS28-213ENST00000530983 TEN1Q86WV5 123 aa14.17□□□□□ -0.14
VPS28-213ENST00000530983 USP9YO00507 2555 aaPredicted RBP14.17□□□□□ -0.14
VPS28-213ENST00000530983 TMEM223A0PJW6 202 aa14.16□□□□□ -0.14
VPS28-213ENST00000530983 I3L3M4 83 aa14.16□□□□□ -0.14
VPS28-213ENST00000530983 VCX2Q9H322 139 aa14.16□□□□□ -0.14
VPS28-213ENST00000530983 MXRA5Q9NR99 2828 aa14.16□□□□□ -0.14
VPS28-213ENST00000530983 LGALS3P17931 250 aaKnown RBP14.16□□□□□ -0.14
VPS28-213ENST00000530983 ANKRD17O75179 2603 aaKnown RBP14.15□□□□□ -0.14
VPS28-213ENST00000530983 SBSPONQ8IVN8 264 aa14.15□□□□□ -0.14
VPS28-213ENST00000530983 MAPK1IP1LQ8NDC0 245 aa14.15□□□□□ -0.14
VPS28-213ENST00000530983 TRGV11A0A075B6L2 103 aa14.15□□□□□ -0.14
VPS28-213ENST00000530983 VPREB3Q9UKI3 123 aa14.15□□□□□ -0.14
VPS28-213ENST00000530983 ELANEP08246 267 aa14.14□□□□□ -0.15
VPS28-213ENST00000530983 ZNF22P17026 224 aaPredicted RBP14.14□□□□□ -0.15
VPS28-213ENST00000530983 IGLV4-3A0A075B6K6 122 aa14.14□□□□□ -0.15
VPS28-213ENST00000530983 LEPROTO15243 131 aa14.14□□□□□ -0.15
VPS28-213ENST00000530983 TGFAP01135 160 aa14.14□□□□□ -0.15
VPS28-213ENST00000530983 UBE2E2Q96LR5 201 aa14.14□□□□□ -0.15
VPS28-213ENST00000530983 ZNF702PQ9H963 129 aa14.14□□□□□ -0.15
VPS28-213ENST00000530983 FBN2P35556 2912 aa14.13□□□□□ -0.15
VPS28-213ENST00000530983 J3QLI3 93 aa14.13□□□□□ -0.15
VPS28-213ENST00000530983 RHODO00212 210 aa14.13□□□□□ -0.15
VPS28-213ENST00000530983 C10orf126Q8N4M7 172 aa14.13□□□□□ -0.15
VPS28-213ENST00000530983 A0A0J9YXV3 536 aa14.12□□□□□ -0.15
VPS28-213ENST00000530983 KNCNA6PVL3 124 aa14.12□□□□□ -0.15
VPS28-213ENST00000530983 RNF183Q96D59 192 aa14.12□□□□□ -0.15
VPS28-213ENST00000530983 CREBBPQ92793 2442 aa14.12□□□□□ -0.15
VPS28-213ENST00000530983 TRBV20-1A0A075B6N2 111 aa14.12□□□□□ -0.15
VPS28-213ENST00000530983 MYO18BQ8IUG5 2567 aa14.11□□□□□ -0.15
VPS28-213ENST00000530983 IGHV3-64A0A075B6Q5 118 aa14.11□□□□□ -0.15
VPS28-213ENST00000530983 IGHV3-73A0A0B4J1V6 119 aa14.11□□□□□ -0.15
VPS28-213ENST00000530983 A8MWV9 139 aa14.11□□□□□ -0.15
VPS28-213ENST00000530983 HTN1P15515 57 aa14.11□□□□□ -0.15
VPS28-213ENST00000530983 ERG28Q9UKR5 140 aa14.11□□□□□ -0.15
VPS28-213ENST00000530983 NACAE9PAV3 2078 aa14.11□□□□□ -0.15
VPS28-213ENST00000530983 PROK1P58294 105 aa14.1□□□□□ -0.15
VPS28-213ENST00000530983 FAM104AQ969W3 186 aa14.1□□□□□ -0.15
VPS28-213ENST00000530983 EDA2RQ9HAV5 297 aa14.1□□□□□ -0.15
VPS28-213ENST00000530983 POLQO75417 2590 aa14.1□□□□□ -0.15
VPS28-213ENST00000530983 ANKRD29Q8N6D5 301 aa14.1□□□□□ -0.15
VPS28-213ENST00000530983 PRO1854Q9UHT4 67 aa14.1□□□□□ -0.15
VPS28-213ENST00000530983 Q6YL49 198 aa14.09□□□□□ -0.15
VPS28-213ENST00000530983 EIF4EBP3O60516 100 aaPredicted RBP14.09□□□□□ -0.15
VPS28-213ENST00000530983 DEFB136Q30KP8 78 aa14.09□□□□□ -0.15
VPS28-213ENST00000530983 C18orf65Q6ZTR6 163 aa14.09□□□□□ -0.15
VPS28-213ENST00000530983 A4D1N5 150 aa14.08□□□□□ -0.16
VPS28-213ENST00000530983 M0QXV9 152 aa14.08□□□□□ -0.16
VPS28-213ENST00000530983 FSHBP01225 129 aa14.08□□□□□ -0.16
VPS28-213ENST00000530983 PRM2P04554 102 aa14.08□□□□□ -0.16
VPS28-213ENST00000530983 SLURP1P55000 103 aa14.08□□□□□ -0.16
VPS28-213ENST00000530983 DEFB131AP59861 70 aa14.08□□□□□ -0.16
VPS28-213ENST00000530983 RBMY1BA6NDE4 496 aaKnown RBP14.08□□□□□ -0.16
VPS28-213ENST00000530983 RBMY1EA6NEQ0 496 aaKnown RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms