RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CGB3P0DN86 165 aa4.33□□□□□ -1.72
CD44-225ENST00000527326 CGB7P0DN87 165 aa4.33□□□□□ -1.72
CD44-225ENST00000527326 LOXP28300 417 aaPredicted RBP4.33□□□□□ -1.72
CD44-225ENST00000527326 ZNF876PQ49A33 203 aa4.33□□□□□ -1.72
CD44-225ENST00000527326 KRTAP5-3Q6L8H2 238 aa4.33□□□□□ -1.72
CD44-225ENST00000527326 STHQ8IWL8 128 aa4.33□□□□□ -1.72
CD44-225ENST00000527326 FAM110DQ8TAY7 271 aaPredicted RBP4.33□□□□□ -1.72
CD44-225ENST00000527326 RNASE6Q93091 150 aaKnown RBP4.33□□□□□ -1.72
CD44-225ENST00000527326 IMMP1LQ96LU5 166 aa4.33□□□□□ -1.72
CD44-225ENST00000527326 DEFB126Q9BYW3 111 aa4.33□□□□□ -1.72
CD44-225ENST00000527326 UNC79Q9P2D8 2635 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 IGKV3D-7A0A0C4DH55 119 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 CGB1A6NKQ9 187 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 NTN3O00634 580 aaPredicted RBP4.32□□□□□ -1.72
CD44-225ENST00000527326 TRGV3P03979 118 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 CCKP06307 115 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 ZNF80P51504 273 aaPredicted RBP4.32□□□□□ -1.72
CD44-225ENST00000527326 B3GALT5-AS1P59052 145 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 RBM3P98179 157 aaKnown RBP4.32□□□□□ -1.72
CD44-225ENST00000527326 SPANXN1Q5VSR9 72 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 IGFL2Q6UWQ7 119 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 ZNF826PQ6ZT77 177 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 C20orf197Q8N268 126 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 RNF7Q9UBF6 113 aa4.32□□□□□ -1.72
CD44-225ENST00000527326 USF3Q68DE3 2245 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 M0R1W7 72 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 IGKV1-16P04430 117 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 SNRPD3P62318 126 aaKnown RBP4.31□□□□□ -1.72
CD44-225ENST00000527326 C17orf58Q2M2W7 97 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 ZNF833PQ6ZTB9 187 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 ZNF575Q86XF7 245 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 LITAFQ99732 161 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 ZFYVE26Q68DK2 2539 aa4.31□□□□□ -1.72
CD44-225ENST00000527326 CEP250Q9BV73 2442 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 GPR179Q6PRD1 2367 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 IGKV2-40A0A087WW87 121 aaPredicted RBP4.3□□□□□ -1.72
CD44-225ENST00000527326 TRAV13-2A0A0B4J235 113 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 IGHV1OR15-9A0A0B4J2B8 117 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 IBA57-AS1B1ANH7 110 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 LMO7DNF2Z398 122 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 CCL21O00585 134 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 TSHBP01222 138 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 IGKV2D-40P01614 121 aaPredicted RBP4.3□□□□□ -1.72
CD44-225ENST00000527326 IGHV3-48P01763 117 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 SAA4P35542 130 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 BEAN1Q3B7T3 259 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 LYPD5Q6UWN5 251 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 LINC00574Q9H8X3 128 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 MOB4Q9Y3A3 225 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 ZNF292O60281 2723 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 UNC13CQ8NB66 2214 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 ASPMQ8IZT6 3477 aa4.3□□□□□ -1.72
CD44-225ENST00000527326 EP300Q09472 2414 aaPredicted RBP4.3□□□□□ -1.72
CD44-225ENST00000527326 A0A087WVE0 104 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 IGHV1-58A0A0C4DH39 117 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 IGHV7-4-1A0A0J9YVY3 117 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 SPTY2D1-AS1A0A0U1RR47 76 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 CCL3P10147 92 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 RPL27AP46776 148 aaKnown RBP4.29□□□□□ -1.72
CD44-225ENST00000527326 HILS1P60008 231 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 BLCAPP62952 87 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 PMS2CLQ68D20 193 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 OBSCN-AS1Q96MR7 158 aa4.29□□□□□ -1.72
CD44-225ENST00000527326 IGKV3D-20A0A0C4DH25 116 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 SRRM5B3KS81 715 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 E7EUB6 86 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 SOCS3O14543 225 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 VCYO14598 125 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 NDUFB3O43676 98 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 IGLV2-23P01705 113 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 TRBV12-3P01733 135 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 IGHV3-9P01782 118 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 Q8TAT8 98 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 LEAP2Q969E1 77 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 LINC00846Q9NV44 126 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 LINC00474Q9P2X8 69 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 OTOGLQ3ZCN5 2332 aa4.28□□□□□ -1.72
CD44-225ENST00000527326 CABIN1Q9Y6J0 2220 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 IGKV1D-17A0A075B6S4 117 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 TRAV12-3A0A0B4J271 114 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 TRBV27A0A0K0K1C4 114 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 F8WEM9 126 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 I3L2K1 104 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 ZNHIT1O43257 154 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 IGKV1-17P01599 117 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 TFF1P04155 84 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 IGHV3-30-3P0DP02 117 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 RPL28P46779 137 aaKnown RBP4.27□□□□□ -1.73
CD44-225ENST00000527326 CIRBPQ14011 172 aaKnown RBP4.27□□□□□ -1.73
CD44-225ENST00000527326 SS18Q15532 418 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 C10orf55Q5SWW7 151 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 HCP5Q6MZN7 132 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 C22orf24Q9Y442 160 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 FRYLO94915 3013 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 FLNBO75369 2602 aaKnown RBP4.27□□□□□ -1.73
CD44-225ENST00000527326 FAM208BQ5VWN6 2430 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 GON4LQ3T8J9 2241 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 DIDO1Q9BTC0 2240 aaKnown RBP4.27□□□□□ -1.73
CD44-225ENST00000527326 ZNF407Q9C0G0 2248 aa4.27□□□□□ -1.73
CD44-225ENST00000527326 ABCA7Q8IZY2 2146 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms