RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 MRPL52Q86TS9 123 aaKnown RBP13.67□□□□□ -0.22
VPS28-207ENST00000526977 ST20Q9HBF5 79 aa13.67□□□□□ -0.22
VPS28-207ENST00000526977 IGHV4-30-4P0DP06 118 aa13.66□□□□□ -0.22
VPS28-207ENST00000526977 APOC4P55056 127 aa13.66□□□□□ -0.22
VPS28-207ENST00000526977 Q6ZN92 141 aa13.66□□□□□ -0.22
VPS28-207ENST00000526977 C1orf158Q8N1D5 194 aa13.66□□□□□ -0.22
VPS28-207ENST00000526977 GOLT1BQ9Y3E0 138 aa13.66□□□□□ -0.22
VPS28-207ENST00000526977 CMYA5Q8N3K9 4069 aa13.66□□□□□ -0.22
VPS28-207ENST00000526977 CSNK1G2-AS1Q8NCQ2 148 aa13.66□□□□□ -0.22
VPS28-207ENST00000526977 NUDT3O95989 172 aa13.65□□□□□ -0.22
VPS28-207ENST00000526977 A8MZ25 164 aa13.64□□□□□ -0.23
VPS28-207ENST00000526977 K7EMI3 77 aa13.64□□□□□ -0.23
VPS28-207ENST00000526977 ORMDL2Q53FV1 153 aa13.64□□□□□ -0.23
VPS28-207ENST00000526977 HSBP1L1C9JCN9 74 aa13.64□□□□□ -0.23
VPS28-207ENST00000526977 POLR2KP53803 58 aaKnown RBP13.64□□□□□ -0.23
VPS28-207ENST00000526977 RPL32P62910 135 aaKnown RBP13.64□□□□□ -0.23
VPS28-207ENST00000526977 A0A1B0GV90 55 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 M0QY20 66 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 C11orf72Q8NBR9 251 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 IGHV3OR16-12A0A075B7B8 117 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 M0R2P5 195 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 ATP5LO75964 103 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 HNRNPA3P51991 378 aaKnown RBP13.63□□□□□ -0.23
VPS28-207ENST00000526977 ZNF415Q09FC8 603 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 ZNF56Q15929 161 aa13.63□□□□□ -0.23
VPS28-207ENST00000526977 TRBV6-5A0A0K0K1A5 114 aa13.62□□□□□ -0.23
VPS28-207ENST00000526977 PRSS1P07477 247 aa13.62□□□□□ -0.23
VPS28-207ENST00000526977 NEGR1Q7Z3B1 354 aa13.62□□□□□ -0.23
VPS28-207ENST00000526977 PTH2Q96A98 100 aa13.62□□□□□ -0.23
VPS28-207ENST00000526977 DKK2Q9UBU2 259 aa13.62□□□□□ -0.23
VPS28-207ENST00000526977 VCYO14598 125 aa13.61□□□□□ -0.23
VPS28-207ENST00000526977 AZU1P20160 251 aa13.61□□□□□ -0.23
VPS28-207ENST00000526977 PIK3CD-AS1Q5SR53 167 aa13.61□□□□□ -0.23
VPS28-207ENST00000526977 KPRPQ5T749 579 aaPredicted RBP13.61□□□□□ -0.23
VPS28-207ENST00000526977 TOMM6Q96B49 74 aa13.61□□□□□ -0.23
VPS28-207ENST00000526977 MRPS16Q9Y3D3 137 aaKnown RBP13.61□□□□□ -0.23
VPS28-207ENST00000526977 ODF1Q14990 250 aa13.6□□□□□ -0.23
VPS28-207ENST00000526977 TP73-AS1Q9UF72 201 aa13.6□□□□□ -0.23
VPS28-207ENST00000526977 SDHAF1A6NFY7 115 aa13.59□□□□□ -0.23
VPS28-207ENST00000526977 SPXQ9BT56 116 aa13.59□□□□□ -0.23
VPS28-207ENST00000526977 UFSP1Q6NVU6 142 aa13.58□□□□□ -0.24
VPS28-207ENST00000526977 ZMAT4Q9H898 229 aa13.58□□□□□ -0.24
VPS28-207ENST00000526977 TRBV27A0A0K0K1C4 114 aa13.57□□□□□ -0.24
VPS28-207ENST00000526977 A8MWV9 139 aa13.57□□□□□ -0.24
VPS28-207ENST00000526977 TMEM263Q8WUH6 116 aaKnown RBP13.57□□□□□ -0.24
VPS28-207ENST00000526977 SCGB3A1Q96QR1 104 aa13.57□□□□□ -0.24
VPS28-207ENST00000526977 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.57□□□□□ -0.24
VPS28-207ENST00000526977 RRN3P1Q2M238 152 aa13.57□□□□□ -0.24
VPS28-207ENST00000526977 SLC25A34Q6PIV7 304 aa13.57□□□□□ -0.24
VPS28-207ENST00000526977 C2orf66Q6UXQ4 117 aa13.57□□□□□ -0.24
VPS28-207ENST00000526977 STPG4Q8N801 248 aa13.57□□□□□ -0.24
VPS28-207ENST00000526977 IGHV3-73A0A0B4J1V6 119 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 RNASE8Q8TDE3 154 aaKnown RBP13.56□□□□□ -0.24
VPS28-207ENST00000526977 DEFB104AQ8WTQ1 72 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 SMIM9A6NGZ8 99 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 BATFQ16520 125 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 ANKRD39Q53RE8 183 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 CFAP126Q5VTH2 177 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 ZFP2Q6ZN57 461 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 C16orf74Q96GX8 76 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 KIR2DL4Q99706 377 aa13.56□□□□□ -0.24
VPS28-207ENST00000526977 EDA2RQ9HAV5 297 aa13.55□□□□□ -0.24
VPS28-207ENST00000526977 MRPL16Q9NX20 251 aaKnown RBP13.55□□□□□ -0.24
VPS28-207ENST00000526977 MGAM2Q2M2H8 2515 aa13.54□□□□□ -0.24
VPS28-207ENST00000526977 COX8AP10176 69 aa13.54□□□□□ -0.24
VPS28-207ENST00000526977 DEFB135Q30KP9 77 aa13.54□□□□□ -0.24
VPS28-207ENST00000526977 HHLA3Q9XRX5 114 aa13.54□□□□□ -0.24
VPS28-207ENST00000526977 A0A087WX48 190 aa13.53□□□□□ -0.24
VPS28-207ENST00000526977 G0S2P27469 103 aa13.53□□□□□ -0.24
VPS28-207ENST00000526977 Q6ZSN1 163 aa13.53□□□□□ -0.24
VPS28-207ENST00000526977 ERASQ7Z444 233 aa13.53□□□□□ -0.24
VPS28-207ENST00000526977 H7C1H1 209 aa13.52□□□□□ -0.24
VPS28-207ENST00000526977 IL17DQ8TAD2 202 aa13.52□□□□□ -0.24
VPS28-207ENST00000526977 RNF183Q96D59 192 aa13.52□□□□□ -0.24
VPS28-207ENST00000526977 RS1O15537 224 aa13.52□□□□□ -0.25
VPS28-207ENST00000526977 IGKCP01834 107 aa13.52□□□□□ -0.25
VPS28-207ENST00000526977 P0DMU3 169 aa13.52□□□□□ -0.25
VPS28-207ENST00000526977 FAM231AP0DMU4 169 aa13.52□□□□□ -0.25
VPS28-207ENST00000526977 FAM231CP0DMU5 169 aa13.52□□□□□ -0.25
VPS28-207ENST00000526977 MRPL35Q9NZE8 188 aaKnown RBP13.52□□□□□ -0.25
VPS28-207ENST00000526977 CYSLTR1Q9Y271 337 aa13.52□□□□□ -0.25
VPS28-207ENST00000526977 X6R8D5 127 aa13.52□□□□□ -0.25
VPS28-207ENST00000526977 TRAV12-1A0A0B4J245 112 aa13.51□□□□□ -0.25
VPS28-207ENST00000526977 DPM2O94777 84 aa13.51□□□□□ -0.25
VPS28-207ENST00000526977 DAZ2Q13117 558 aaKnown RBP13.51□□□□□ -0.25
VPS28-207ENST00000526977 NEXN-AS1Q8NBZ9 246 aa13.51□□□□□ -0.25
VPS28-207ENST00000526977 NOTCH1P46531 2555 aa13.51□□□□□ -0.25
VPS28-207ENST00000526977 DNAH3Q8TD57 4116 aa13.51□□□□□ -0.25
VPS28-207ENST00000526977 HINT1P49773 126 aaPredicted RBP13.51□□□□□ -0.25
VPS28-207ENST00000526977 TP53TG1Q9Y2A0 90 aa13.51□□□□□ -0.25
VPS28-207ENST00000526977 I3L3M4 83 aa13.5□□□□□ -0.25
VPS28-207ENST00000526977 FGF6P10767 208 aa13.5□□□□□ -0.25
VPS28-207ENST00000526977 OR11H2Q8NH07 326 aa13.5□□□□□ -0.25
VPS28-207ENST00000526977 BAALCQ8WXS3 180 aa13.5□□□□□ -0.25
VPS28-207ENST00000526977 Q9UF83 564 aa13.5□□□□□ -0.25
VPS28-207ENST00000526977 NBEAL1Q6ZS30 2694 aa13.5□□□□□ -0.25
VPS28-207ENST00000526977 IGIPA6NJ69 53 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 RHODO00212 210 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 TSHBP01222 138 aa13.49□□□□□ -0.25
VPS28-207ENST00000526977 RPL39P62891 51 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 905.8 ms