RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 RBM38Q9H0Z9 239 aaKnown RBP10.53□□□□□ -0.72
PVT1-220ENST00000524165 M0R036 132 aa10.52□□□□□ -0.73
PVT1-220ENST00000524165 TMBIM6P55061 237 aa10.52□□□□□ -0.73
PVT1-220ENST00000524165 ARL2-SNX15V9GYD0 113 aa10.52□□□□□ -0.73
PVT1-220ENST00000524165 CENPXA8MT69 81 aa10.51□□□□□ -0.73
PVT1-220ENST00000524165 SULT1A2P50226 295 aa10.51□□□□□ -0.73
PVT1-220ENST00000524165 C1orf137Q5JT78 98 aa10.51□□□□□ -0.73
PVT1-220ENST00000524165 TRAV1-1A0A0B4J248 108 aa10.5□□□□□ -0.73
PVT1-220ENST00000524165 ARL14EPLP0DKL9 152 aa10.5□□□□□ -0.73
PVT1-220ENST00000524165 SUMO1P63165 101 aaKnown RBP10.5□□□□□ -0.73
PVT1-220ENST00000524165 TRIQKQ629K1 86 aa10.5□□□□□ -0.73
PVT1-220ENST00000524165 H0Y9J4 135 aa10.49□□□□□ -0.73
PVT1-220ENST00000524165 HMGB3O15347 200 aaKnown RBP10.49□□□□□ -0.73
PVT1-220ENST00000524165 S100A5P33763 92 aa10.49□□□□□ -0.73
PVT1-220ENST00000524165 CRIP1P50238 77 aa10.49□□□□□ -0.73
PVT1-220ENST00000524165 RPL13AP40429 203 aaKnown RBP10.48□□□□□ -0.73
PVT1-220ENST00000524165 SCGB1C1Q8TD33 95 aa10.48□□□□□ -0.73
PVT1-220ENST00000524165 SEC22CQ9BRL7 303 aa10.48□□□□□ -0.73
PVT1-220ENST00000524165 MUC17Q685J3 4493 aa10.47□□□□□ -0.73
PVT1-220ENST00000524165 TRAV34A0A0B4J273 112 aa10.47□□□□□ -0.73
PVT1-220ENST00000524165 SH2D1AO60880 128 aa10.47□□□□□ -0.73
PVT1-220ENST00000524165 IGLV7-43P04211 117 aa10.47□□□□□ -0.73
PVT1-220ENST00000524165 KRTAP1-4P0C5Y4 121 aa10.47□□□□□ -0.73
PVT1-220ENST00000524165 PTTG1IPP53801 180 aa10.47□□□□□ -0.73
PVT1-220ENST00000524165 TMEM243Q9BU79 118 aa10.47□□□□□ -0.73
PVT1-220ENST00000524165 F5H697 171 aa10.46□□□□□ -0.73
PVT1-220ENST00000524165 AMTP48728 403 aa10.46□□□□□ -0.73
PVT1-220ENST00000524165 UBE2D1P51668 147 aa10.46□□□□□ -0.73
PVT1-220ENST00000524165 LINC01559Q495D7 138 aa10.46□□□□□ -0.73
PVT1-220ENST00000524165 FAM162BQ5T6X4 162 aa10.46□□□□□ -0.73
PVT1-220ENST00000524165 COX8CQ7Z4L0 72 aa10.46□□□□□ -0.73
PVT1-220ENST00000524165 CARD19Q96LW7 228 aa10.46□□□□□ -0.73
PVT1-220ENST00000524165 TMSB15BA0A087X1C1 80 aa10.45□□□□□ -0.74
PVT1-220ENST00000524165 A0A1W2PNN7 141 aa10.45□□□□□ -0.74
PVT1-220ENST00000524165 STAG3L2P0CL84 134 aa10.45□□□□□ -0.74
PVT1-220ENST00000524165 STAG3L3P0CL85 134 aa10.45□□□□□ -0.74
PVT1-220ENST00000524165 Q86TA4 180 aa10.44□□□□□ -0.74
PVT1-220ENST00000524165 CHCHD10Q8WYQ3 142 aaPredicted RBP10.44□□□□□ -0.74
PVT1-220ENST00000524165 GCHFRP30047 84 aa10.43□□□□□ -0.74
PVT1-220ENST00000524165 ZNF471Q9BX82 626 aaPredicted RBP10.43□□□□□ -0.74
PVT1-220ENST00000524165 NOL3O60936 208 aaKnown RBP10.42□□□□□ -0.74
PVT1-220ENST00000524165 CDC34P49427 236 aaPredicted RBP10.42□□□□□ -0.74
PVT1-220ENST00000524165 OR10AG1Q8NH19 301 aa10.42□□□□□ -0.74
PVT1-220ENST00000524165 IGKV3OR2-268A0A0C4DH90 116 aa10.41□□□□□ -0.74
PVT1-220ENST00000524165 H0YIZ8 118 aa10.41□□□□□ -0.74
PVT1-220ENST00000524165 UBE2L6O14933 153 aa10.41□□□□□ -0.74
PVT1-220ENST00000524165 RPL12P30050 165 aaKnown RBP10.41□□□□□ -0.74
PVT1-220ENST00000524165 GAGE2BQ13066 116 aa10.41□□□□□ -0.74
PVT1-220ENST00000524165 ZNF674Q2M3X9 581 aa10.41□□□□□ -0.74
PVT1-220ENST00000524165 TMEM167BQ9NRX6 74 aa10.41□□□□□ -0.74
PVT1-220ENST00000524165 ZFP30Q9Y2G7 519 aa10.41□□□□□ -0.74
PVT1-220ENST00000524165 LOC107984640A0A0U1RRK4 108 aa10.4□□□□□ -0.74
PVT1-220ENST00000524165 A6NHS1 94 aa10.4□□□□□ -0.74
PVT1-220ENST00000524165 CYCSP99999 105 aaKnown RBP10.4□□□□□ -0.74
PVT1-220ENST00000524165 MED28Q9H204 178 aa10.4□□□□□ -0.74
PVT1-220ENST00000524165 HSPB11Q9Y547 144 aa10.4□□□□□ -0.74
PVT1-220ENST00000524165 A0A1W2PRE2 83 aa10.39□□□□□ -0.75
PVT1-220ENST00000524165 TSPAN13O95857 204 aa10.39□□□□□ -0.75
PVT1-220ENST00000524165 LINC01547P58512 204 aaPredicted RBP10.39□□□□□ -0.75
PVT1-220ENST00000524165 SYCNQ0VAF6 134 aa10.39□□□□□ -0.75
PVT1-220ENST00000524165 FOXI1Q12951 378 aa10.39□□□□□ -0.75
PVT1-220ENST00000524165 LRRC37A5PQ49AS3 106 aa10.39□□□□□ -0.75
PVT1-220ENST00000524165 C9orf116Q5BN46 136 aaPredicted RBP10.39□□□□□ -0.75
PVT1-220ENST00000524165 LINC00526Q96FQ7 95 aa10.39□□□□□ -0.75
PVT1-220ENST00000524165 PGLYRP4Q96LB8 373 aa10.39□□□□□ -0.75
PVT1-220ENST00000524165 SDHCQ99643 169 aaPredicted RBP10.39□□□□□ -0.75
PVT1-220ENST00000524165 CARHSP1Q9Y2V2 147 aaKnown RBP10.39□□□□□ -0.75
PVT1-220ENST00000524165 IGHV1-58A0A0C4DH39 117 aa10.38□□□□□ -0.75
PVT1-220ENST00000524165 EIF5AP63241 154 aaKnown RBP10.38□□□□□ -0.75
PVT1-220ENST00000524165 PHF5AQ7RTV0 110 aaKnown RBP10.38□□□□□ -0.75
PVT1-220ENST00000524165 RAB24Q969Q5 203 aa10.38□□□□□ -0.75
PVT1-220ENST00000524165 NUDT15Q9NV35 164 aa10.38□□□□□ -0.75
PVT1-220ENST00000524165 M0QY20 66 aa10.37□□□□□ -0.75
PVT1-220ENST00000524165 PEX7O00628 323 aa10.37□□□□□ -0.75
PVT1-220ENST00000524165 SMIM17P0DL12 118 aa10.37□□□□□ -0.75
PVT1-220ENST00000524165 SMIM3Q9BZL3 60 aa10.37□□□□□ -0.75
PVT1-220ENST00000524165 SNAI2O43623 268 aa10.36□□□□□ -0.75
PVT1-220ENST00000524165 CXorf1O96002 111 aa10.36□□□□□ -0.75
PVT1-220ENST00000524165 CXCL1P09341 107 aa10.36□□□□□ -0.75
PVT1-220ENST00000524165 FGF6P10767 208 aa10.36□□□□□ -0.75
PVT1-220ENST00000524165 SPANXN1Q5VSR9 72 aa10.36□□□□□ -0.75
PVT1-220ENST00000524165 SSBP4Q9BWG4 385 aaPredicted RBP10.36□□□□□ -0.75
PVT1-220ENST00000524165 IL7P13232 177 aa10.35□□□□□ -0.75
PVT1-220ENST00000524165 HIST1H2BAQ96A08 127 aa10.35□□□□□ -0.75
PVT1-220ENST00000524165 CDIP1Q9H305 208 aa10.35□□□□□ -0.75
PVT1-220ENST00000524165 ZNF561-AS1K7EIQ3 104 aa10.34□□□□□ -0.75
PVT1-220ENST00000524165 PLA2G10O15496 165 aa10.34□□□□□ -0.75
PVT1-220ENST00000524165 LYRM1O43325 122 aa10.34□□□□□ -0.75
PVT1-220ENST00000524165 OR5AL1P0C617 328 aa10.34□□□□□ -0.75
PVT1-220ENST00000524165 AP1S3Q96PC3 154 aa10.34□□□□□ -0.75
PVT1-220ENST00000524165 MLST8Q9BVC4 326 aa10.34□□□□□ -0.75
PVT1-220ENST00000524165 A0A087WZ39 114 aa10.33□□□□□ -0.76
PVT1-220ENST00000524165 SIX6O95475 246 aa10.33□□□□□ -0.76
PVT1-220ENST00000524165 NKX2-5P52952 324 aaPredicted RBP10.33□□□□□ -0.76
PVT1-220ENST00000524165 SRSF3P84103 164 aaKnown RBP10.33□□□□□ -0.76
PVT1-220ENST00000524165 ISOC2Q96AB3 205 aa10.33□□□□□ -0.76
PVT1-220ENST00000524165 FMC1Q96HJ9 113 aa10.33□□□□□ -0.76
PVT1-220ENST00000524165 WFDC1Q9HC57 220 aa10.33□□□□□ -0.76
PVT1-220ENST00000524165 MUC21A0A140T8X8 626 aa10.32□□□□□ -0.76
PVT1-220ENST00000524165 H2AFB2P0C5Z0 115 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms