RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 FAM231AP0DMU4 169 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 FAM231CP0DMU5 169 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 CRYBA4P53673 196 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 RPL39LQ96EH5 51 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 Q9UF83 564 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 PRO0255Q9UI72 69 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 SACSQ9NZJ4 4579 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 TRBV6-5A0A0K0K1A5 114 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BKO60814 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BJP06899 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HTN3P15516 51 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BOP23527 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BBP33778 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BDP58876 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BCP62807 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 RHOHQ15669 191 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST2H2BEQ16778 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 OR10J3Q5JRS4 329 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BHQ93079 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 DNAJC30Q96LL9 226 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BNQ99877 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 HIST1H2BMQ99879 126 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 PRADC1Q9BSG0 188 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 STARD9Q9P2P6 4700 aa9.13□□□□□ -0.95
LIMCH1-220ENST00000514190 PRSS47A8MTI9 375 aa9.12□□□□□ -0.95
LIMCH1-220ENST00000514190 C3orf84H3BNL1 204 aa9.12□□□□□ -0.95
LIMCH1-220ENST00000514190 RAB5BP61020 215 aa9.12□□□□□ -0.95
LIMCH1-220ENST00000514190 NEXN-AS1Q8NBZ9 246 aa9.12□□□□□ -0.95
LIMCH1-220ENST00000514190 C18orf32Q8TCD1 76 aa9.12□□□□□ -0.95
LIMCH1-220ENST00000514190 C20orf78Q9BR46 151 aa9.12□□□□□ -0.95
LIMCH1-220ENST00000514190 ST20Q9HBF5 79 aa9.12□□□□□ -0.95
LIMCH1-220ENST00000514190 CSMD3Q7Z407 3707 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 DEFB131BA0A096LNP1 70 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 PAX4O43316 350 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 SUMO2P61956 95 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 Q0VG73 95 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 MUC7Q8TAX7 377 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 VSIG2Q96IQ7 327 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 MAP1LC3AQ9H492 121 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 TNFRSF18Q9Y5U5 241 aa9.11□□□□□ -0.95
LIMCH1-220ENST00000514190 RYR2Q92736 4967 aa9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 TRBV7-3A0A075B6L6 115 aa9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 TRAV26-1A0A087WT03 109 aa9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 TRAV10A0A0B4J240 114 aa9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 POLR2KP53803 58 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 RPL32P62910 135 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 RPL36AP83881 106 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 IQCJQ1A5X6 159 aa9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 ZNRF2Q8NHG8 242 aa9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 RPL36ALQ969Q0 106 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 TMEM70Q9BUB7 260 aa9.1□□□□□ -0.95
LIMCH1-220ENST00000514190 A0A0J9YY99 117 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 LOC100131303A0A0U1RQF7 123 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 LOC389332A0A1B0GUA5 103 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 GAGE12JA6NER3 117 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 SDHAF1A6NFY7 115 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 H3BNG1 76 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 VCYO14598 125 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 GYPEP15421 78 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 GAGE1Q13065 139 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 GAGE4Q13068 117 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 GAGE5Q13069 117 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 GAGE13Q4V321 117 aa9.09□□□□□ -0.95
LIMCH1-220ENST00000514190 IGLV2-18A0A075B6J9 118 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 UBE2D3P61077 147 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 UBE2D2P62837 147 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 BAGE3Q86Y29 109 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 Q8N8P6 123 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 PRSS3P2Q8NHM4 247 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 SMIM2Q9BVW6 85 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 TENM2Q9NT68 2774 aa9.08□□□□□ -0.96
LIMCH1-220ENST00000514190 TRBV27A0A0K0K1C4 114 aa9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 LINC00694P0DN24 101 aa9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 PMCHP20382 165 aa9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 IFI27P40305 119 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 CASC10Q5T4H9 136 aa9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 NIT1Q86X76 327 aa9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 PHLDA1Q8WV24 401 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 NXT2Q9NPJ8 142 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-220ENST00000514190 DNAH1Q9P2D7 4330 aa9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 I3L3M4 83 aa9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 LINC00614P0C842 121 aa9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 NDUFA6P56556 154 aa9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 PLECQ15149 4684 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 MRPL23Q16540 153 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 COA6Q5JTJ3 125 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 NEGR1Q7Z3B1 354 aa9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 DAZ4Q86SG3 579 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 URB1-AS1Q96HZ7 61 aa9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 DAZ3Q9NR90 486 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-220ENST00000514190 LINC01546A6NGU7 62 aa9.05□□□□□ -0.96
LIMCH1-220ENST00000514190 FA2HQ7L5A8 372 aa9.05□□□□□ -0.96
LIMCH1-220ENST00000514190 ICOSQ9Y6W8 199 aa9.05□□□□□ -0.96
LIMCH1-220ENST00000514190 LYSTQ99698 3801 aa9.05□□□□□ -0.96
LIMCH1-220ENST00000514190 A0A096LPF7 62 aa9.04□□□□□ -0.96
LIMCH1-220ENST00000514190 K7EMI3 77 aa9.04□□□□□ -0.96
LIMCH1-220ENST00000514190 SERF1AO75920 110 aa9.04□□□□□ -0.96
LIMCH1-220ENST00000514190 SH2D6Q7Z4S9 175 aa9.04□□□□□ -0.96
LIMCH1-220ENST00000514190 ATP6V0E2Q8NHE4 81 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms