RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 NDUFA12Q9UI09 145 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 A0A087WWL8 130 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 FAM223BA6NKX1 122 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 IGHV1-46P01743 117 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 COX7A1P24310 79 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 C20orf197Q8N268 126 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 NUP37Q8NFH4 326 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 LITAFQ99732 161 aa9□□□□□ -0.97
LIMCH1-213ENST00000511496 EPOPA6NHQ4 379 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 DNAL4O96015 105 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 LYPD2Q6UXB3 125 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 C9orf139Q6ZV77 190 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 PRSS33Q8NF86 280 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 C16orf92Q96LL3 132 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 VCYO14598 125 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 GNRH2O43555 120 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 PRORYQ9H606 182 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 Q9HAA7 133 aa8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 CNOT1A5YKK6 2376 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-213ENST00000511496 IGHV1-3A0A0C4DH29 117 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 BUB1B-PAK6H3BSN5 160 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 IGHV3OR16-10A0A075B7F0 116 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 NDUFB3O43676 98 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 HOXD3P31249 432 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 MIAQ16674 131 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 FAM74A4Q5TZK3 123 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 LINC01561Q8N1V8 128 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 PPP1R17O96001 155 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 CCL17Q92583 94 aa8.98□□□□□ -0.97
LIMCH1-213ENST00000511496 SPTBN1Q01082 2364 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-213ENST00000511496 INAFM2P0DMQ5 153 aa8.97□□□□□ -0.97
LIMCH1-213ENST00000511496 RNASE13Q5GAN3 156 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-213ENST00000511496 APC2O95996 2303 aa8.97□□□□□ -0.97
LIMCH1-213ENST00000511496 LY6LH3BQJ8 138 aa8.97□□□□□ -0.97
LIMCH1-213ENST00000511496 IGLV1-44P01699 117 aa8.97□□□□□ -0.97
LIMCH1-213ENST00000511496 DEFB1P60022 68 aa8.96□□□□□ -0.97
LIMCH1-213ENST00000511496 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.96□□□□□ -0.97
LIMCH1-213ENST00000511496 COX7A2LO14548 114 aa8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 IGHV1-8P0DP01 117 aa8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 C14orf132Q9NPU4 83 aa8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 CACNA1HO95180 2353 aa8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 F8W735 103 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 POLR2KP53803 58 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 HILS1P60008 231 aa8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 ZNF625Q96I27 306 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-213ENST00000511496 TRAV23DV6A0A075B6W5 121 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 GHRHP01286 108 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 C9orf47Q6ZRZ4 202 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 WFDC9Q8NEX5 89 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 FANCD2OSQ96PS1 177 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 A0A0J9YX75 114 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 CTSGP08311 255 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 SUMO4Q6EEV6 95 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 LINC00846Q9NV44 126 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 TRAV12-2A0A075B6T6 113 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 CLPSL1A2RUU4 121 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 CDSNQ15517 529 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 Q8N2B8 174 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 C9orf106Q8NAJ2 232 aa8.95□□□□□ -0.98
LIMCH1-213ENST00000511496 RPL11P62913 178 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-213ENST00000511496 AVPP01185 164 aa8.94□□□□□ -0.98
LIMCH1-213ENST00000511496 RNASE4P34096 147 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-213ENST00000511496 RBMY1BA6NDE4 496 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 RBMY1EA6NEQ0 496 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 RBMY1DP0C7P1 496 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 RBMY1A1P0DJD3 496 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 RBMY1CP0DJD4 496 aa8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 RBMY1FQ15415 496 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 ZFAND3Q9H8U3 227 aa8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 DKK4Q9UBT3 224 aa8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 NDUFC2O95298 119 aa8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 VMO1Q7Z5L0 202 aa8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 LOC400499M0QZD8 3231 aa8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 PRIMA1Q86XR5 153 aa8.93□□□□□ -0.98
LIMCH1-213ENST00000511496 IL17DQ8TAD2 202 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 BUB3O43684 328 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 SAP25Q8TEE9 199 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 FAM218AQ96MZ4 157 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 C22orf24Q9Y442 160 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 MED13LQ71F56 2210 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 DOPEY2Q9Y3R5 2298 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 TRAV21A0A0B4J279 112 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 ZNF576Q9H609 170 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 SLC25A15Q9Y619 301 aa8.92□□□□□ -0.98
LIMCH1-213ENST00000511496 IGLV11-55A0A075B6I3 123 aa8.91□□□□□ -0.98
LIMCH1-213ENST00000511496 SERP1Q9Y6X1 66 aa8.91□□□□□ -0.98
LIMCH1-213ENST00000511496 MUC4Q99102 2169 aa8.91□□□□□ -0.98
LIMCH1-213ENST00000511496 C9orf129Q5T035 196 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-213ENST00000511496 LINC00474Q9P2X8 69 aa8.91□□□□□ -0.98
LIMCH1-213ENST00000511496 Q6JHZ5 121 aa8.9□□□□□ -0.98
LIMCH1-213ENST00000511496 IGHV1-58A0A0C4DH39 117 aa8.9□□□□□ -0.98
LIMCH1-213ENST00000511496 CCL21O00585 134 aa8.9□□□□□ -0.98
LIMCH1-213ENST00000511496 IGHG2P01859 326 aa8.9□□□□□ -0.98
LIMCH1-213ENST00000511496 IGLV4-3A0A075B6K6 122 aa8.9□□□□□ -0.99
LIMCH1-213ENST00000511496 CD28P10747 220 aa8.9□□□□□ -0.99
LIMCH1-213ENST00000511496 XCL1P47992 114 aa8.9□□□□□ -0.99
LIMCH1-213ENST00000511496 XCL2Q9UBD3 114 aa8.9□□□□□ -0.99
LIMCH1-213ENST00000511496 IGKV3-7A0A075B6H7 116 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 IGLV3-9A0A075B6K5 115 aa8.89□□□□□ -0.99
LIMCH1-213ENST00000511496 IGHV1-69P01742 117 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms