RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CARD19Q96LW7 228 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 C11orf21Q9P2W6 132 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 CRIP2P52943 208 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 DPH3Q96FX2 82 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 URB1-AS1Q96HZ7 61 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 TEX48A0A1B0GUV7 120 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 DNAJC9-AS1A6NH13 148 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 F8W735 103 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 CENPFP49454 3210 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 SPANXDQ9BXN6 97 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 TP73-AS1Q9UF72 201 aa8.08□□□□□ -1.12
LIMCH1-205ENST00000503057 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 C9orf66Q5T8R8 295 aa8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 TMEM263Q8WUH6 116 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 PLXNB1O43157 2135 aa8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 TM2D2Q9BX73 214 aa8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 RPL32P62910 135 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 PRR9Q5T870 116 aa8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 GAGE2AQ6NT46 116 aa8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 PTPRQQ9UMZ3 2332 aa8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 IGHV1-58A0A0C4DH39 117 aa8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 SPTAN1Q13813 2472 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-205ENST00000503057 TRAV4A0A0B4J268 109 aa8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 KLLNB2CW77 178 aa8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 TRBV10-1A0A0K0K1A3 114 aa8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 RNASE3P12724 160 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 PSMG3-AS1Q96PY0 264 aa8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 CITED2Q99967 270 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 LAMTOR3Q9UHA4 124 aa8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 ICOSQ9Y6W8 199 aa8.06□□□□□ -1.12
LIMCH1-205ENST00000503057 VSIG2Q96IQ7 327 aa8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 SH2D6Q7Z4S9 175 aa8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 OPRPNQ99935 248 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 TRBV6-5A0A0K0K1A5 114 aa8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 TINCRA0A1B0GVN0 87 aa8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 M0QY20 66 aa8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 C2orf91Q6ZV80 131 aa8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 NTN5Q8WTR8 489 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 ZNF702PQ9H963 129 aa8.05□□□□□ -1.12
LIMCH1-205ENST00000503057 IGKV2D-26A0A0A0MRZ7 120 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 BRI3O95415 125 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 CRYBA4P53673 196 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 DEFB114Q30KQ6 69 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 ANGP03950 147 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 NDUFA11Q86Y39 141 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 ANKRD29Q8N6D5 301 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 ATP6V0E2Q8NHE4 81 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 TRBV27A0A0K0K1C4 114 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 IGHV3-30-3P0DP02 117 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 WFDC2Q14508 124 aa8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 TET2Q6N021 2002 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-205ENST00000503057 A0A096LPF7 62 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 C10orf99Q6UWK7 81 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 Q71RC1 249 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 G3V4G9 280 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 ZNF561-AS1K7EIQ3 104 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 SOCS3O14543 225 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 GYPEP15421 78 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 XCL1P47992 114 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 TEN1Q86WV5 123 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 C3orf56Q8N813 242 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 COX7B2Q8TF08 81 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 DCANP1Q8TF63 244 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 NAV3Q8IVL0 2385 aa8.03□□□□□ -1.12
LIMCH1-205ENST00000503057 Q6ZS46 218 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 SPANXB1Q9NS25 103 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 A0A1W2PPR1 153 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 TMEM223A0PJW6 202 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 P0DMU3 169 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 FAM231AP0DMU4 169 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 FAM231CP0DMU5 169 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 NXPH4O95158 308 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 Q6ZUT4 128 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 MAPKAPK5-AS1Q8N8E1 139 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 C9orf85Q96MD7 179 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 HIST1H4AP62805 103 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 CLPSL2Q6UWE3 100 aa8.02□□□□□ -1.13
LIMCH1-205ENST00000503057 CREBBPQ92793 2442 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 GAS8-AS1O95177 125 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 IGLV4-3A0A075B6K6 122 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 A0A0B4J2C4 111 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 LINC01620Q4KN68 170 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 HHLA3Q9XRX5 114 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 A0A0J9YY99 117 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 CEMP1Q6PRD7 247 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 NFE4Q86UQ8 179 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 HTTP42858 3142 aa8.01□□□□□ -1.13
LIMCH1-205ENST00000503057 A0A0J9YXY3 114 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 FOXI1Q12951 378 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 MIAQ16674 131 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 CFAP126Q5VTH2 177 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 C5orf38Q86SI9 138 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 ZMAT4Q9H898 229 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 ZNF580Q9UK33 172 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 ZNF843Q8N446 348 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 PCNTO95613 3336 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 ZNF22P17026 224 aaPredicted RBP8□□□□□ -1.13
LIMCH1-205ENST00000503057 PYGO1Q9Y3Y4 419 aa8□□□□□ -1.13
LIMCH1-205ENST00000503057 Q6ZQT7 251 aa7.99□□□□□ -1.13
LIMCH1-205ENST00000503057 ATP5G1P05496 136 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms