RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 MGAQ8IWI9 3026 aa2.3□□□□□ -2.04
CCDC39-207ENST00000495817 BOD1L1Q8NFC6 3051 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 CACNA1EQ15878 2313 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 MDC1Q14676 2089 aaKnown RBP2.29□□□□□ -2.04
CCDC39-207ENST00000495817 TRBV27A0A0K0K1C4 114 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 HCRTO43612 131 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 NDUFB3O43676 98 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 HIST1H2BKO60814 126 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 TNFP01375 233 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 HIST1H2BJP06899 126 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 CTSDP07339 412 aaPredicted RBP2.29□□□□□ -2.04
CCDC39-207ENST00000495817 SPINK8P0C7L1 97 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 TRGC1P0CF51 173 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 HLA-DRB4P13762 266 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 KRTAP21-2Q3LI59 83 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 MRPL54Q6P161 138 aaKnown RBP2.29□□□□□ -2.04
CCDC39-207ENST00000495817 SOSTDC1Q6X4U4 206 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 BPIFA4PQ86YQ2 179 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 TTC9CQ8N5M4 171 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 SPACA4Q8TDM5 124 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 PRELID3AQ96N28 172 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 NPCDR1Q9BY65 106 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 LSM2Q9Y333 95 aaKnown RBP2.29□□□□□ -2.04
CCDC39-207ENST00000495817 HLA-DRB4X5D2U9 266 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 CSMD1Q96PZ7 3565 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 F5P12259 2224 aa2.29□□□□□ -2.04
CCDC39-207ENST00000495817 UBR5O95071 2799 aaPredicted RBP2.28□□□□□ -2.04
CCDC39-207ENST00000495817 MYO18BQ8IUG5 2567 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 APC2O95996 2303 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 PITX3O75364 302 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 KLF7O75840 302 aaPredicted RBP2.28□□□□□ -2.04
CCDC39-207ENST00000495817 IGHV3-7P01780 117 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 MT-ND6P03923 174 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 CXCL8P10145 99 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 HMGA1P17096 107 aaKnown RBP2.28□□□□□ -2.04
CCDC39-207ENST00000495817 YPEL3P61236 119 aaPredicted RBP2.28□□□□□ -2.04
CCDC39-207ENST00000495817 RPL18Q07020 188 aaKnown RBP2.28□□□□□ -2.04
CCDC39-207ENST00000495817 C9orf153Q5TBE3 101 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 TMEM91Q6ZNR0 172 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 TEN1Q86WV5 123 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 HIST3H2BBQ8N257 126 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 OR5D16Q8NGK9 328 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 HIST1H2BLQ99880 126 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 RERGLQ9H628 205 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 IER3IP1Q9Y5U9 82 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 KIAA1549Q9HCM3 1950 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 DNHD1Q96M86 4753 aa2.28□□□□□ -2.04
CCDC39-207ENST00000495817 TNRC6AQ8NDV7 1962 aaKnown RBP2.27□□□□□ -2.05
CCDC39-207ENST00000495817 TRGV10A0A0A0MS01 117 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 GEMIN2O14893 280 aaKnown RBP2.27□□□□□ -2.05
CCDC39-207ENST00000495817 MRPS14O60783 128 aaKnown RBP2.27□□□□□ -2.05
CCDC39-207ENST00000495817 PYYP10082 97 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 UBA52P62987 128 aaKnown RBP2.27□□□□□ -2.05
CCDC39-207ENST00000495817 CLLU1Q5K131 121 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 FAM74A1Q5RGS3 127 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 PATE2Q6UY27 113 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 Q6ZUT4 128 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 MIR17HGQ75NE6 70 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 SIGLECL1Q8N7X8 197 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 C3orf56Q8N813 242 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 OR4B1Q8NGF8 309 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 GINS4Q9BRT9 223 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 OSTCQ9NRP0 149 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 DNAJC15Q9Y5T4 150 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 CHCHD2Q9Y6H1 151 aaPredicted RBP2.27□□□□□ -2.05
CCDC39-207ENST00000495817 SDK1Q7Z5N4 2213 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 NAV2Q8IVL1 2488 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 TEX15Q9BXT5 2789 aa2.27□□□□□ -2.05
CCDC39-207ENST00000495817 ASCC3Q8N3C0 2202 aaKnown RBP2.26□□□□□ -2.05
CCDC39-207ENST00000495817 MALRD1Q5VYJ5 2156 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 TRAV12-2A0A075B6T6 113 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 HMSDA8MTL9 139 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 UQCRQO14949 82 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 OR1I1O60431 355 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 HBDP02042 147 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 CD3DP04234 171 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 IFITM1P13164 125 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 NFYAP23511 347 aaPredicted RBP2.26□□□□□ -2.05
CCDC39-207ENST00000495817 TMEM155Q4W5P6 130 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 ATOH7Q8N100 152 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 LCN9Q8WX39 176 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 LSM10Q969L4 123 aaKnown RBP2.26□□□□□ -2.05
CCDC39-207ENST00000495817 YPEL2Q96QA6 119 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 SEC11CQ9BY50 192 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 PTPN13Q12923 2485 aa2.26□□□□□ -2.05
CCDC39-207ENST00000495817 SPAG17Q6Q759 2223 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 UTP20O75691 2785 aaKnown RBP2.25□□□□□ -2.05
CCDC39-207ENST00000495817 PNMA8CA0A1B0GUJ8 204 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 OOSP1A8MZH6 123 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 RER1O15258 196 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 KLRD1Q13241 179 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 KIAA2026Q5HYC2 2103 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 Q6AWC8 147 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 SVBPQ8N300 66 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 KCNRGQ8N5I3 272 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 OTOSQ8NHW6 89 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 DIRC1Q969H9 104 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 ZNF714Q96N38 554 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 VAMP8Q9BV40 100 aa2.25□□□□□ -2.05
CCDC39-207ENST00000495817 AGPAT4-IT1Q9H0P7 198 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms