RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 GAGE12IP0CL82 117 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 SSTP61278 116 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 RHOHQ15669 191 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 SAMD10Q9BYL1 202 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 JPT2Q9H910 190 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 ST20Q9HBF5 79 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 PRO0255Q9UI72 69 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 NACAE9PAV3 2078 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 K7EQD1 137 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 VCYO14598 125 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 NPYP01303 97 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 POLR2KP53803 58 aaKnown RBP6.85□□□□□ -1.31
USP54-214ENST00000492357 KIAA1644Q3SXP7 199 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 TMEM97Q5BJF2 176 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 LCE2AQ5TA79 106 aaPredicted RBP6.85□□□□□ -1.31
USP54-214ENST00000492357 SH2D6Q7Z4S9 175 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 BAGE3Q86Y29 109 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 Q8N8P6 123 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 ZNF479Q96JC4 524 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 PRADC1Q9BSG0 188 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 SMIM2Q9BVW6 85 aa6.85□□□□□ -1.31
USP54-214ENST00000492357 TRGV4A0A0C4DH28 118 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 NCR2O95944 276 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 LINC00614P0C842 121 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 DEFB130BP0DP73 79 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 DEFB130AP0DP74 79 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 EMP1P54849 157 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 RPL36AP83881 106 aaKnown RBP6.84□□□□□ -1.31
USP54-214ENST00000492357 FHL2Q14192 279 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 ORMDL2Q53FV1 153 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 PRSS3P2Q8NHM4 247 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 RPL36ALQ969Q0 106 aaKnown RBP6.84□□□□□ -1.31
USP54-214ENST00000492357 KIR2DL4Q99706 377 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 AP5S1Q9NUS5 200 aa6.84□□□□□ -1.31
USP54-214ENST00000492357 TRBV7-3A0A075B6L6 115 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 TRAV26-1A0A087WT03 109 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 SDHAF1A6NFY7 115 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 PRB2P02812 416 aaPredicted RBP6.83□□□□□ -1.32
USP54-214ENST00000492357 HOXA5P20719 270 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 FA2HQ7L5A8 372 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 DAZ4Q86SG3 579 aaKnown RBP6.83□□□□□ -1.32
USP54-214ENST00000492357 TMEM70Q9BUB7 260 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 DAZ3Q9NR90 486 aaKnown RBP6.83□□□□□ -1.32
USP54-214ENST00000492357 HHLA3Q9XRX5 114 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 TNFRSF18Q9Y5U5 241 aa6.83□□□□□ -1.32
USP54-214ENST00000492357 IGLV2-18A0A075B6J9 118 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 TRAV26-2A0A0B4J265 109 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 I3L3M4 83 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 HSBP1O75506 76 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 CRYBA4P53673 196 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 NDUFA6P56556 154 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 SNRPEP62304 92 aaKnown RBP6.82□□□□□ -1.32
USP54-214ENST00000492357 SMAGPQ0VAQ4 97 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 NIT1Q86X76 327 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 SLC25A29Q8N8R3 303 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 C11orf45Q8TAV5 145 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 TMEM18Q96B42 140 aa6.82□□□□□ -1.32
USP54-214ENST00000492357 A0A0J9YWU9 116 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 SMKR1H3BMG3 65 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 SERF1AO75920 110 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 NPSP0C0P6 89 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 LINC00694P0DN24 101 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 LAGE3Q14657 143 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 C12orf74Q32Q52 190 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 NEXN-AS1Q8NBZ9 246 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 RETNQ9HD89 108 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 CELA1Q9UNI1 258 aa6.81□□□□□ -1.32
USP54-214ENST00000492357 TRAV10A0A0B4J240 114 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 S100A2P29034 98 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 IFI27P40305 119 aaPredicted RBP6.8□□□□□ -1.32
USP54-214ENST00000492357 AKR1D1P51857 326 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 TIRAPP58753 221 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 UBE2D3P61077 147 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 UBE2D2P62837 147 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 DEFA6Q01524 100 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 RPL39LQ96EH5 51 aaKnown RBP6.8□□□□□ -1.32
USP54-214ENST00000492357 GTSF1LQ9H1H1 148 aa6.8□□□□□ -1.32
USP54-214ENST00000492357 NBEAL2Q6ZNJ1 2754 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 IGHV3-73A0A0B4J1V6 119 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 H7C423 109 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 DEFB4AO15263 64 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 PAX4O43316 350 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 GAS8-AS1O95177 125 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 HBDP02042 147 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 FCER1GP30273 86 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 LINC00310P59036 64 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 MRPL23Q16540 153 aaKnown RBP6.79□□□□□ -1.32
USP54-214ENST00000492357 IQCJQ1A5X6 159 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 RNASEKQ6P5S7 137 aaKnown RBP6.79□□□□□ -1.32
USP54-214ENST00000492357 Q6ZSN1 163 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 HIST3H2BBQ8N257 126 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 URB1-AS1Q96HZ7 61 aa6.79□□□□□ -1.32
USP54-214ENST00000492357 PKIAP61925 76 aa6.78□□□□□ -1.32
USP54-214ENST00000492357 COTL1Q14019 142 aa6.78□□□□□ -1.32
USP54-214ENST00000492357 C15orf53Q8NAA6 179 aa6.78□□□□□ -1.32
USP54-214ENST00000492357 ZNRF2Q8NHG8 242 aa6.78□□□□□ -1.32
USP54-214ENST00000492357 LOC389332A0A1B0GUA5 103 aa6.77□□□□□ -1.33
USP54-214ENST00000492357 F5H768 121 aa6.77□□□□□ -1.33
USP54-214ENST00000492357 AMTP48728 403 aa6.77□□□□□ -1.33
USP54-214ENST00000492357 TCTAP57738 103 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms