RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 ANKRD39Q53RE8 183 aa10.02□□□□□ -0.81
COL6A3-212ENST00000491769 Q8NA96 180 aa10.02□□□□□ -0.81
COL6A3-212ENST00000491769 GPR179Q6PRD1 2367 aa10.01□□□□□ -0.81
COL6A3-212ENST00000491769 LYRM9A8MSI8 78 aa10.01□□□□□ -0.81
COL6A3-212ENST00000491769 TRBV6-1A0A0K0K1D8 114 aa10.01□□□□□ -0.81
COL6A3-212ENST00000491769 UBE2D3P61077 147 aa10.01□□□□□ -0.81
COL6A3-212ENST00000491769 A0A0B4J2C4 111 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 IGLV3-1P01715 115 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 LINC01545Q5VT33 79 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 C9orf85Q96MD7 179 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 CEMP1Q6PRD7 247 aaPredicted RBP10□□□□□ -0.81
COL6A3-212ENST00000491769 PCNX1Q96RV3 2341 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 TRAV10A0A0B4J240 114 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 P0DMU3 169 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 FAM231AP0DMU4 169 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 FAM231CP0DMU5 169 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 IGKV2D-26A0A0A0MRZ7 120 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 HRCT1Q6UXD1 115 aa10□□□□□ -0.81
COL6A3-212ENST00000491769 UFSP1Q6NVU6 142 aa9.99□□□□□ -0.81
COL6A3-212ENST00000491769 CHCHD10Q8WYQ3 142 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-212ENST00000491769 PATE2Q6UY27 113 aa9.99□□□□□ -0.81
COL6A3-212ENST00000491769 IGF1P05019 195 aa9.99□□□□□ -0.81
COL6A3-212ENST00000491769 SPINK6Q6UWN8 80 aa9.99□□□□□ -0.81
COL6A3-212ENST00000491769 Q6ZVH6 145 aa9.99□□□□□ -0.81
COL6A3-212ENST00000491769 A0A1W2PNU3 283 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-212ENST00000491769 JMJD7-PLA2G4BH0Y9G9 81 aa9.98□□□□□ -0.81
COL6A3-212ENST00000491769 CLEC2BQ92478 149 aa9.98□□□□□ -0.81
COL6A3-212ENST00000491769 TP53TG3Q9ULZ0 132 aa9.98□□□□□ -0.81
COL6A3-212ENST00000491769 SMIM9A6NGZ8 99 aa9.98□□□□□ -0.81
COL6A3-212ENST00000491769 SVIPQ8NHG7 77 aa9.98□□□□□ -0.81
COL6A3-212ENST00000491769 Q6ZUT4 128 aa9.98□□□□□ -0.81
COL6A3-212ENST00000491769 ZFAND2AQ8N6M9 145 aa9.98□□□□□ -0.81
COL6A3-212ENST00000491769 TOMM6Q96B49 74 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 TMEM256-PLSCR3K7ERE1 68 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 PLXNA4Q9HCM2 1894 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 NFE4Q86UQ8 179 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 UPK3BQ9BT76 320 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 CHD3Q12873 2000 aaKnown RBP9.97□□□□□ -0.81
COL6A3-212ENST00000491769 MALRD1Q5VYJ5 2156 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 LGALS9O00182 355 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 ODF3L1Q8IXM7 274 aa9.97□□□□□ -0.81
COL6A3-212ENST00000491769 TRBV10-1A0A0K0K1A3 114 aa9.96□□□□□ -0.81
COL6A3-212ENST00000491769 FBXL19-AS1Q494R0 122 aa9.96□□□□□ -0.81
COL6A3-212ENST00000491769 CREBBPQ92793 2442 aa9.96□□□□□ -0.81
COL6A3-212ENST00000491769 PPDPFQ9H3Y8 114 aa9.96□□□□□ -0.81
COL6A3-212ENST00000491769 USP17L23D6RBM5 183 aa9.96□□□□□ -0.82
COL6A3-212ENST00000491769 IGLV1-47P01700 117 aa9.96□□□□□ -0.82
COL6A3-212ENST00000491769 LINC01548A6NM66 108 aa9.96□□□□□ -0.82
COL6A3-212ENST00000491769 MED14OSP0DP75 135 aa9.96□□□□□ -0.82
COL6A3-212ENST00000491769 FOXI1Q12951 378 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 DEFB114Q30KQ6 69 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 KIR2DL5BA0A0G2JN68 375 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 KIR2DL5BA0A0G2JPC4 375 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 WISP2O76076 250 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 KIR2DL5AQ8N109 375 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 MIFP14174 115 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 Q6ZSV7 163 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 LMO4P61968 165 aa9.95□□□□□ -0.82
COL6A3-212ENST00000491769 NDUFS6O75380 124 aaKnown RBP9.94□□□□□ -0.82
COL6A3-212ENST00000491769 K7ERS5 55 aa9.94□□□□□ -0.82
COL6A3-212ENST00000491769 IGHV1-58A0A0C4DH39 117 aa9.94□□□□□ -0.82
COL6A3-212ENST00000491769 BPY2O14599 106 aa9.94□□□□□ -0.82
COL6A3-212ENST00000491769 RLFQ13129 1914 aa9.93□□□□□ -0.82
COL6A3-212ENST00000491769 CACNA1HO95180 2353 aa9.93□□□□□ -0.82
COL6A3-212ENST00000491769 TANC1Q9C0D5 1861 aa9.93□□□□□ -0.82
COL6A3-212ENST00000491769 E7EUB6 86 aa9.93□□□□□ -0.82
COL6A3-212ENST00000491769 LINC00173Q6ZV60 143 aa9.93□□□□□ -0.82
COL6A3-212ENST00000491769 TNRC6BQ9UPQ9 1833 aaKnown RBP9.93□□□□□ -0.82
COL6A3-212ENST00000491769 CCDC140Q96MF4 163 aa9.93□□□□□ -0.82
COL6A3-212ENST00000491769 WFDC10BQ8IUB3 73 aa9.92□□□□□ -0.82
COL6A3-212ENST00000491769 C11orf86A6NJI1 115 aa9.92□□□□□ -0.82
COL6A3-212ENST00000491769 A0A0J9YWU9 116 aa9.91□□□□□ -0.82
COL6A3-212ENST00000491769 XAGE1AQ9HD64 81 aa9.91□□□□□ -0.82
COL6A3-212ENST00000491769 LINC00322Q6ZN03 302 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-212ENST00000491769 C20orf203Q8NBC4 194 aa9.91□□□□□ -0.82
COL6A3-212ENST00000491769 UBE2D2P62837 147 aa9.91□□□□□ -0.82
COL6A3-212ENST00000491769 KRTAP27-1Q3LI81 207 aa9.91□□□□□ -0.82
COL6A3-212ENST00000491769 PTPRQQ9UMZ3 2332 aa9.9□□□□□ -0.82
COL6A3-212ENST00000491769 SYCNQ0VAF6 134 aa9.9□□□□□ -0.82
COL6A3-212ENST00000491769 TNCP24821 2201 aa9.9□□□□□ -0.82
COL6A3-212ENST00000491769 MED13Q9UHV7 2174 aa9.9□□□□□ -0.82
COL6A3-212ENST00000491769 FAM236AA0A1B0GUQ0 79 aa9.9□□□□□ -0.83
COL6A3-212ENST00000491769 FAM236BA0A1B0GV22 79 aa9.9□□□□□ -0.83
COL6A3-212ENST00000491769 ATOX1O00244 68 aa9.9□□□□□ -0.83
COL6A3-212ENST00000491769 ZNF706Q9Y5V0 76 aaPredicted RBP9.9□□□□□ -0.83
COL6A3-212ENST00000491769 PLA2G2AP14555 144 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 NUPR2A6NF83 97 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 SIP14410 1827 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 TTTY13Q9BZ97 58 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 IGKV2-28A0A075B6P5 120 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 IGLV9-49A0A0B4J1Y8 123 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 TEX49A0A1B0GTD5 131 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 IGKV2D-28P01615 120 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 DCANP1Q8TF63 244 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 ADAMTS9Q9P2N4 1935 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 RETNQ9HD89 108 aa9.89□□□□□ -0.83
COL6A3-212ENST00000491769 PLXNA2O75051 1894 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 BBC3Q96PG8 261 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-212ENST00000491769 CRYGBP07316 175 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 MSMPQ1L6U9 139 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms