RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 FOXI1Q12951 378 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 BEAN1Q3B7T3 259 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 FAM159AQ6UWV7 190 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 SCGB1D4Q6XE38 83 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 ZFP2Q6ZN57 461 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 TRPT1Q86TN4 253 aaKnown RBP4.34□□□□□ -1.71
VPS41-214ENST00000490924 TEN1Q86WV5 123 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 NDUFA11Q86Y39 141 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 C10orf126Q8N4M7 172 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 C14orf178Q8N769 122 aaPredicted RBP4.34□□□□□ -1.71
VPS41-214ENST00000490924 DCANP1Q8TF63 244 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 PPDPFLQ8WWR9 84 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 LINC00476Q8WZB0 136 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 PLEKHB2Q96CS7 222 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 PIMREGQ9BSJ6 248 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 SPANXDQ9BXN6 97 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 BPESC1Q9GZL8 116 aa4.34□□□□□ -1.71
VPS41-214ENST00000490924 MRPL16Q9NX20 251 aaKnown RBP4.34□□□□□ -1.71
VPS41-214ENST00000490924 MGAQ8IWI9 3026 aa4.34□□□□□ -1.72
VPS41-214ENST00000490924 BOD1L1Q8NFC6 3051 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 UBR5O95071 2799 aaPredicted RBP4.33□□□□□ -1.72
VPS41-214ENST00000490924 TRGV11A0A075B6L2 103 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 LEPROTO15243 131 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 LY6HO94772 140 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 APOMO95445 188 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-30P01768 117 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-30-5P0DP03 117 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 SNRPD3P62318 126 aaKnown RBP4.33□□□□□ -1.72
VPS41-214ENST00000490924 SRSF9Q13242 221 aaKnown RBP eCLIP4.33□□□□□ -1.72
VPS41-214ENST00000490924 WFDC2Q14508 124 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 CLUHP3Q96NS8 147 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 AMELXQ99217 191 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 SPAG8Q99932 426 aaPredicted RBP4.33□□□□□ -1.72
VPS41-214ENST00000490924 LINC00467Q9BRT7 94 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 RHPN1-AS1Q9BWJ2 59 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 TTTY13Q9BZ97 58 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 PRORYQ9H606 182 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 TP53TG1Q9Y2A0 90 aa4.33□□□□□ -1.72
VPS41-214ENST00000490924 ATMQ13315 3056 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-35A0A0C4DH35 117 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 A0A0J9YXY3 114 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 A0A1W2PPR1 153 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 J3QLI3 93 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 J3QQQ9 107 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 M0QY20 66 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 TIMM17BO60830 172 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 TSPAN13O95857 204 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 TSHBP01222 138 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 AZU1P20160 251 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 PSMB8P28062 276 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 SMAGPQ0VAQ4 97 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 ETDBQ3ZM63 59 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 SUMO4Q6EEV6 95 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 UNQ9165/PRO28630Q6UXU0 137 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 C10orf105Q8TEF2 133 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 RPL39LQ96EH5 51 aaKnown RBP4.32□□□□□ -1.72
VPS41-214ENST00000490924 PRO1854Q9UHT4 67 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 TSSC4Q9Y5U2 329 aaPredicted RBP4.32□□□□□ -1.72
VPS41-214ENST00000490924 NBPF19A0A087WUL8 3843 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 FBN2P35556 2912 aa4.32□□□□□ -1.72
VPS41-214ENST00000490924 IGHV1OR15-1A0A075B7D0 117 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-16A0A0C4DH30 117 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-66A0A0C4DH42 116 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 TMEM223A0PJW6 202 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 LINC01548A6NM66 108 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 A8MWV9 139 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 I3L3M4 83 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 ELANEP08246 267 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 LGALS3P17931 250 aaKnown RBP4.31□□□□□ -1.72
VPS41-214ENST00000490924 RPL13AP40429 203 aaKnown RBP4.31□□□□□ -1.72
VPS41-214ENST00000490924 MRPS36P82909 103 aaKnown RBP4.31□□□□□ -1.72
VPS41-214ENST00000490924 MRPL23Q16540 153 aaKnown RBP4.31□□□□□ -1.72
VPS41-214ENST00000490924 C20orf203Q8NBC4 194 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 COPS9Q8WXC6 57 aa4.31□□□□□ -1.72
VPS41-214ENST00000490924 NAA38Q9BRA0 125 aaKnown RBP4.31□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3OR16-8A0A075B7F1 116 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 TRBV30A0A0K0K1B3 111 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 FAM240AA0A1B0GVK7 77 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 B4DSR2 109 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 K7EQG2 157 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 RHODO00212 210 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 IGHV4-39P01824 125 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 MSMBP08118 114 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 MGPP08493 103 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 CFC1BP0CG36 223 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 CFC1P0CG37 223 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 IFITM1P13164 125 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 TMEM95Q3KNT9 176 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 Q6Q795 121 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 ZNF418Q8TF45 676 aaPredicted RBP4.3□□□□□ -1.72
VPS41-214ENST00000490924 DNAJC30Q96LL9 226 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 UBTD1Q9HAC8 227 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 SPANXCQ9NY87 97 aa4.3□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3OR16-13A0A075B7E8 117 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-74A0A0B4J1X5 117 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 M0R2P5 195 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 GNRH2O43555 120 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-33P01772 117 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 PF4V1P10720 104 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 ZNRF2Q8NHG8 242 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms