RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 CCL21O00585 134 aa12.19□□□□□ -0.46
MCF2L-229ENST00000488765 NBL1P41271 181 aa12.19□□□□□ -0.46
MCF2L-229ENST00000488765 KLRB1Q12918 225 aa12.19□□□□□ -0.46
MCF2L-229ENST00000488765 C4orf26Q17RF5 130 aa12.19□□□□□ -0.46
MCF2L-229ENST00000488765 ZNF672Q499Z4 452 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-229ENST00000488765 C3orf22Q8N5N4 141 aa12.19□□□□□ -0.46
MCF2L-229ENST00000488765 A0A0J9YXV3 536 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-229ENST00000488765 CLPSL1A2RUU4 121 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 RNASE4P34096 147 aaKnown RBP12.18□□□□□ -0.46
MCF2L-229ENST00000488765 RPL11P62913 178 aaKnown RBP12.18□□□□□ -0.46
MCF2L-229ENST00000488765 LY6DQ14210 128 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 ADAMTSL4-AS1Q5T5F5 129 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 METTL26Q96S19 204 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 RPL13AP40429 203 aaKnown RBP12.18□□□□□ -0.46
MCF2L-229ENST00000488765 CDSNQ15517 529 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 RHOHQ15669 191 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 ICOSQ9Y6W8 199 aa12.18□□□□□ -0.46
MCF2L-229ENST00000488765 HRNRQ86YZ3 2850 aaPredicted RBP12.17□□□□□ -0.46
MCF2L-229ENST00000488765 GAGE2AQ6NT46 116 aa12.17□□□□□ -0.46
MCF2L-229ENST00000488765 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.17□□□□□ -0.46
MCF2L-229ENST00000488765 DSCR8Q96T75 97 aa12.17□□□□□ -0.46
MCF2L-229ENST00000488765 EPG5Q9HCE0 2579 aa12.17□□□□□ -0.46
MCF2L-229ENST00000488765 E7EQL1 145 aa12.17□□□□□ -0.46
MCF2L-229ENST00000488765 M0R2P5 195 aa12.17□□□□□ -0.46
MCF2L-229ENST00000488765 COX8CQ7Z4L0 72 aa12.17□□□□□ -0.46
MCF2L-229ENST00000488765 TRAV13-1A0A0B4J241 112 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 ECSCRQ19T08 205 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 HRCT1Q6UXD1 115 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 LINC00311Q8N616 119 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 DPH3P1Q9H4G8 78 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 POM121L12Q8N7R1 296 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 LINC00477Q96M19 166 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 TMEM30BQ3MIR4 351 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 CLEC19AQ6UXS0 136 aa12.16□□□□□ -0.46
MCF2L-229ENST00000488765 MUC4Q99102 2169 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 IGIPA6NJ69 53 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 IGLV1-47P01700 117 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 RNASE6Q93091 150 aaKnown RBP12.15□□□□□ -0.46
MCF2L-229ENST00000488765 VPS13CQ709C8 3753 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 ITPR1Q14643 2758 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 P0DMU3 169 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 FAM231AP0DMU4 169 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 FAM231CP0DMU5 169 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 GPHB5Q86YW7 130 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 C16orf92Q96LL3 132 aa12.15□□□□□ -0.46
MCF2L-229ENST00000488765 J3KT08 172 aa12.15□□□□□ -0.47
MCF2L-229ENST00000488765 NBR2O15453 112 aa12.15□□□□□ -0.47
MCF2L-229ENST00000488765 SPANXA1Q9NS26 97 aa12.15□□□□□ -0.47
MCF2L-229ENST00000488765 I3L3M4 83 aa12.14□□□□□ -0.47
MCF2L-229ENST00000488765 ZNF625Q96I27 306 aaPredicted RBP12.14□□□□□ -0.47
MCF2L-229ENST00000488765 SETD2Q9BYW2 2564 aaPredicted RBP12.14□□□□□ -0.47
MCF2L-229ENST00000488765 C15orf32Q32M92 178 aa12.14□□□□□ -0.47
MCF2L-229ENST00000488765 IGLV11-55A0A075B6I3 123 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 EBI3Q14213 229 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 RNF152Q8N8N0 203 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 CFAP46Q8IYW2 2715 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 TMEM223A0PJW6 202 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 SDHAF1A6NFY7 115 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 BUB3O43684 328 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 COX6CP09669 75 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 ABCA12Q86UK0 2595 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 A0A0J9YXY3 114 aa12.13□□□□□ -0.47
MCF2L-229ENST00000488765 K7ENP7 123 aa12.12□□□□□ -0.47
MCF2L-229ENST00000488765 USP9XQ93008 2570 aaPredicted RBP12.12□□□□□ -0.47
MCF2L-229ENST00000488765 A0A0B4J2C4 111 aa12.11□□□□□ -0.47
MCF2L-229ENST00000488765 C9orf47Q6ZRZ4 202 aa12.11□□□□□ -0.47
MCF2L-229ENST00000488765 NXPH4O95158 308 aa12.11□□□□□ -0.47
MCF2L-229ENST00000488765 UQCRQO14949 82 aa12.11□□□□□ -0.47
MCF2L-229ENST00000488765 SDIM1Q6ZPB5 146 aa12.11□□□□□ -0.47
MCF2L-229ENST00000488765 C20orf173Q96LM9 149 aa12.11□□□□□ -0.47
MCF2L-229ENST00000488765 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.1□□□□□ -0.47
MCF2L-229ENST00000488765 TRBV30A0A0K0K1B3 111 aa12.1□□□□□ -0.47
MCF2L-229ENST00000488765 ZNF876PQ49A33 203 aa12.1□□□□□ -0.47
MCF2L-229ENST00000488765 CCDC168Q8NDH2 2452 aa12.1□□□□□ -0.47
MCF2L-229ENST00000488765 TRBV7-7A0A0K0K1E9 115 aa12.09□□□□□ -0.47
MCF2L-229ENST00000488765 IGKV3D-7A0A0C4DH55 119 aa12.09□□□□□ -0.47
MCF2L-229ENST00000488765 IGKV3-20P01619 116 aa12.09□□□□□ -0.47
MCF2L-229ENST00000488765 PTPN13Q12923 2485 aa12.09□□□□□ -0.47
MCF2L-229ENST00000488765 SRSF2Q01130 221 aaKnown RBP12.09□□□□□ -0.47
MCF2L-229ENST00000488765 SUMO4Q6EEV6 95 aa12.09□□□□□ -0.47
MCF2L-229ENST00000488765 A0A087WVE0 104 aa12.08□□□□□ -0.48
MCF2L-229ENST00000488765 G3V318 75 aa12.08□□□□□ -0.48
MCF2L-229ENST00000488765 PAPPA-AS1Q5QFB9 102 aa12.08□□□□□ -0.48
MCF2L-229ENST00000488765 M0R1W7 72 aa12.08□□□□□ -0.48
MCF2L-229ENST00000488765 IGHV3-30-3P0DP02 117 aa12.08□□□□□ -0.48
MCF2L-229ENST00000488765 HOXD3P31249 432 aaPredicted RBP12.07□□□□□ -0.48
MCF2L-229ENST00000488765 VMO1Q7Z5L0 202 aa12.07□□□□□ -0.48
MCF2L-229ENST00000488765 LINC00526Q96FQ7 95 aa12.07□□□□□ -0.48
MCF2L-229ENST00000488765 IGHV3-73A0A0B4J1V6 119 aa12.07□□□□□ -0.48
MCF2L-229ENST00000488765 OXTP01178 125 aa12.07□□□□□ -0.48
MCF2L-229ENST00000488765 CELSR2Q9HCU4 2923 aa12.07□□□□□ -0.48
MCF2L-229ENST00000488765 F5H768 121 aa12.06□□□□□ -0.48
MCF2L-229ENST00000488765 LEPROTO15243 131 aa12.06□□□□□ -0.48
MCF2L-229ENST00000488765 OR13C6PQ8NH95 151 aa12.06□□□□□ -0.48
MCF2L-229ENST00000488765 NUP37Q8NFH4 326 aa12.05□□□□□ -0.48
MCF2L-229ENST00000488765 SONP18583 2426 aaKnown RBP12.05□□□□□ -0.48
MCF2L-229ENST00000488765 RNASE3P12724 160 aaKnown RBP12.05□□□□□ -0.48
MCF2L-229ENST00000488765 HTN1P15515 57 aa12.05□□□□□ -0.48
MCF2L-229ENST00000488765 DAZ2Q13117 558 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms