RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 Q6Q795 121 aa14.02□□□□□ -0.16
CCDC88B-207ENST00000479965 TRAV8-3A0A0A6YYJ7 113 aa14.02□□□□□ -0.17
CCDC88B-207ENST00000479965 SAA4P35542 130 aa14.02□□□□□ -0.17
CCDC88B-207ENST00000479965 RPL13AP40429 203 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-207ENST00000479965 RNASE13Q5GAN3 156 aaKnown RBP14.01□□□□□ -0.17
CCDC88B-207ENST00000479965 ICOSQ9Y6W8 199 aa14.01□□□□□ -0.17
CCDC88B-207ENST00000479965 COX6CP09669 75 aa14.01□□□□□ -0.17
CCDC88B-207ENST00000479965 MED14OSP0DP75 135 aa14.01□□□□□ -0.17
CCDC88B-207ENST00000479965 CELSR1Q9NYQ6 3014 aa14.01□□□□□ -0.17
CCDC88B-207ENST00000479965 SPTAN1Q13813 2472 aaKnown RBP14□□□□□ -0.17
CCDC88B-207ENST00000479965 TRBV30A0A0K0K1B3 111 aa14□□□□□ -0.17
CCDC88B-207ENST00000479965 IGHV3OR16-10A0A075B7F0 116 aa14□□□□□ -0.17
CCDC88B-207ENST00000479965 TRBV27A0A0K0K1C4 114 aa14□□□□□ -0.17
CCDC88B-207ENST00000479965 IGHV3-30-3P0DP02 117 aa13.99□□□□□ -0.17
CCDC88B-207ENST00000479965 Q8NA96 180 aa13.99□□□□□ -0.17
CCDC88B-207ENST00000479965 A8MZ25 164 aa13.99□□□□□ -0.17
CCDC88B-207ENST00000479965 TIMM21Q9BVV7 248 aa13.99□□□□□ -0.17
CCDC88B-207ENST00000479965 TRAV41A0A0B4J266 112 aa13.98□□□□□ -0.17
CCDC88B-207ENST00000479965 SORL1Q92673 2214 aa13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 TRAV12-2A0A075B6T6 113 aa13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 ADAMTSL4-AS1Q5T5F5 129 aa13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 COL12A1Q99715 3063 aa13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 PRRC2AP48634 2157 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 CEMP1Q6PRD7 247 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 MDFICQ9P1T7 246 aa13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 SOCS3O14543 225 aa13.97□□□□□ -0.17
CCDC88B-207ENST00000479965 DAND5Q8N907 189 aa13.96□□□□□ -0.17
CCDC88B-207ENST00000479965 POM121L12Q8N7R1 296 aa13.96□□□□□ -0.18
CCDC88B-207ENST00000479965 ZFHX2Q9C0A1 2572 aaPredicted RBP13.96□□□□□ -0.18
CCDC88B-207ENST00000479965 TRGV11A0A075B6L2 103 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 RHPN1-AS1Q9BWJ2 59 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 CD28P10747 220 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 IGLV4-3A0A075B6K6 122 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 NXPH4O95158 308 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 IGHV1-69P01742 117 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 C20orf203Q8NBC4 194 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 NDUFA12Q9UI09 145 aa13.95□□□□□ -0.18
CCDC88B-207ENST00000479965 IGHV3-73A0A0B4J1V6 119 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 FAM236AA0A1B0GUQ0 79 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 FAM236BA0A1B0GV22 79 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 HRNRQ86YZ3 2850 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 M0QY20 66 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 FAM19A4Q96LR4 140 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 SIRPDQ9H106 197 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 UBTD1Q9HAC8 227 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 KLK9Q9UKQ9 250 aa13.94□□□□□ -0.18
CCDC88B-207ENST00000479965 EDN2P20800 178 aa13.93□□□□□ -0.18
CCDC88B-207ENST00000479965 CREBBPQ92793 2442 aa13.93□□□□□ -0.18
CCDC88B-207ENST00000479965 HTN1P15515 57 aa13.93□□□□□ -0.18
CCDC88B-207ENST00000479965 C5orf56Q8N8D9 126 aa13.93□□□□□ -0.18
CCDC88B-207ENST00000479965 H3BT86 120 aa13.93□□□□□ -0.18
CCDC88B-207ENST00000479965 I3L3M4 83 aa13.92□□□□□ -0.18
CCDC88B-207ENST00000479965 DUX5Q96PT3 197 aa13.92□□□□□ -0.18
CCDC88B-207ENST00000479965 A0A0U1RRA0 63 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 NSUN5P1Q3KNT7 163 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 LITAFQ99732 161 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 TRBV6-5A0A0K0K1A5 114 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 NDUFA4O00483 81 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 BRI3O95415 125 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 PF4V1P10720 104 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 RHOHQ15669 191 aa13.91□□□□□ -0.18
CCDC88B-207ENST00000479965 PPDPFQ9H3Y8 114 aa13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 CEP295Q9C0D2 2601 aa13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 TMEM101Q96IK0 257 aa13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 MAP1AP78559 2803 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 FAM223BA6NKX1 122 aa13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 KLLNB2CW77 178 aa13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 CCL21O00585 134 aa13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 FAM223AQ8IWN6 122 aa13.9□□□□□ -0.18
CCDC88B-207ENST00000479965 TMEM95Q3KNT9 176 aa13.89□□□□□ -0.19
CCDC88B-207ENST00000479965 APRG1Q8IVJ8 170 aa13.89□□□□□ -0.19
CCDC88B-207ENST00000479965 LST1O00453 97 aa13.88□□□□□ -0.19
CCDC88B-207ENST00000479965 LY6EQ16553 131 aa13.88□□□□□ -0.19
CCDC88B-207ENST00000479965 A0A0J9YX75 114 aa13.88□□□□□ -0.19
CCDC88B-207ENST00000479965 CDSNQ15517 529 aa13.88□□□□□ -0.19
CCDC88B-207ENST00000479965 MIAQ16674 131 aa13.87□□□□□ -0.19
CCDC88B-207ENST00000479965 IGHV3-16A0A0C4DH30 117 aa13.87□□□□□ -0.19
CCDC88B-207ENST00000479965 NPFFO15130 113 aa13.87□□□□□ -0.19
CCDC88B-207ENST00000479965 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.87□□□□□ -0.19
CCDC88B-207ENST00000479965 IGF2-ASQ6U949 168 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 BRD3OSQ6XYD6 125 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 MRPL23Q16540 153 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 KLK9Q2XQG4 91 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 LINC01587Q99440 93 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 IGHV1-58A0A0C4DH39 117 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 SPINK13Q1W4C9 94 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 C9orf153Q5TBE3 101 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 TMEM61Q8N0U2 210 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 ZNF625Q96I27 306 aaPredicted RBP13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 VPREB3Q9UKI3 123 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 TNFRSF18Q9Y5U5 241 aa13.86□□□□□ -0.19
CCDC88B-207ENST00000479965 SPANXA1Q9NS26 97 aa13.85□□□□□ -0.19
CCDC88B-207ENST00000479965 MOB4Q9Y3A3 225 aa13.85□□□□□ -0.19
CCDC88B-207ENST00000479965 ID1P41134 155 aa13.84□□□□□ -0.19
CCDC88B-207ENST00000479965 PROK1P58294 105 aa13.84□□□□□ -0.19
CCDC88B-207ENST00000479965 FAM240AA0A1B0GVK7 77 aa13.84□□□□□ -0.19
CCDC88B-207ENST00000479965 TMEM126AQ9H061 195 aa13.84□□□□□ -0.19
CCDC88B-207ENST00000479965 LINC01600Q96MT4 127 aa13.83□□□□□ -0.2
CCDC88B-207ENST00000479965 TRBV7-7A0A0K0K1E9 115 aa13.83□□□□□ -0.2
CCDC88B-207ENST00000479965 SPANXDQ9BXN6 97 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms