RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ANAPC10Q9UM13 185 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 TRAV18A0A075B6X5 111 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 A0A1W2PRE2 83 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 H3BS24 57 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 HLA-DQA1P01909 254 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 SMIM17P0DL12 118 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 PI3P19957 117 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 MYL9P24844 172 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 RNASE4P34096 147 aaKnown RBP2.85□□□□□ -1.95
USP4-209ENST00000475873 RPL29P47914 159 aaKnown RBP2.85□□□□□ -1.95
USP4-209ENST00000475873 GNG4P50150 75 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 RPL24P83731 157 aaKnown RBP2.85□□□□□ -1.95
USP4-209ENST00000475873 SPHARQ15513 63 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 IAH1Q2TAA2 248 aaPredicted RBP2.85□□□□□ -1.95
USP4-209ENST00000475873 SP6Q3SY56 376 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 FAM162BQ5T6X4 162 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 C1orf195Q5TG92 126 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 EIF5AL1Q6IS14 154 aaKnown RBP2.85□□□□□ -1.95
USP4-209ENST00000475873 SAMD12Q8N8I0 201 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 OR10D4PQ8NGN7 298 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 OR13C8Q8NGS7 320 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 OR2G3Q8NGZ4 309 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 MCFD2Q8NI22 146 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 THAP6Q8TBB0 222 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 ANAPC13Q9BS18 74 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 SMCO4Q9NRQ5 59 aa2.85□□□□□ -1.95
USP4-209ENST00000475873 FLGP20930 4061 aaPredicted RBP2.85□□□□□ -1.95
USP4-209ENST00000475873 IGHV3-64A0A075B6Q5 118 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 BORCS7-ASMTA0A0B4J1R7 106 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 TRAV1-2A0A0B4J238 106 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 CEBPZOSA8MTT3 80 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 B5MCH6 92 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 H3BQ15 152 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 J3QR89 54 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 MPC2O95563 127 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 MT-ND4LP03901 98 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 OR5G3P0C626 314 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 CRISP2P16562 243 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 RPL7P18124 248 aaKnown RBP2.84□□□□□ -1.95
USP4-209ENST00000475873 IFITM3Q01628 133 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 COX6A2Q02221 97 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 TMEM241Q24JQ0 296 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 MUC21Q5SSG8 566 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 PATE2Q6UY27 113 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 Q6ZRP5 223 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 STPG4Q8N801 248 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 TMEM75Q8N9X5 138 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 PRSS3P2Q8NHM4 247 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 TMED6Q8WW62 240 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 MBD3L1Q8WWY6 194 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 C2orf50Q96LR7 162 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 MGLLQ99685 303 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 NDFIP1Q9BT67 221 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 TMEM147Q9BVK8 224 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 AGPAT4-IT1Q9H0P7 198 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 SDF2L1Q9HCN8 221 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 UQCC1Q9NVA1 299 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 LAMTOR2Q9Y2Q5 125 aa2.84□□□□□ -1.95
USP4-209ENST00000475873 CARHSP1Q9Y2V2 147 aaKnown RBP2.84□□□□□ -1.95
USP4-209ENST00000475873 A0A087WX48 190 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 IGHV3-73A0A0B4J1V6 119 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 IGKV2-24A0A0C4DH68 120 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 FAM24AA6NFZ4 105 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 CRYM-AS1A6NIL9 109 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 M0R3E3 92 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 ZNF253O75346 499 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 CFC1BP0CG36 223 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 CRYGAP11844 174 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 RND3P61587 244 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 CD164Q04900 197 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 JOSD1Q15040 202 aaPredicted RBP2.83□□□□□ -1.96
USP4-209ENST00000475873 RHOHQ15669 191 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 C4orf26Q17RF5 130 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 TPRXLQ17RH7 258 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 IQCJQ1A5X6 159 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 TMUB2Q71RG4 321 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 PRSS48Q7RTY5 328 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 FAM19A1Q7Z5A9 133 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 KRTAP19-1Q8IUB9 90 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 OR11H4Q8NGC9 324 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 OR5H2Q8NGV7 314 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 RETNLBQ9BQ08 111 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 AP5S1Q9NUS5 200 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 SPANXCQ9NY87 97 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 NAT8Q9UHE5 227 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 NEBP20929 6669 aa2.83□□□□□ -1.96
USP4-209ENST00000475873 A0A096LNI7 61 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 TRBV6-4A0A1B0GX49 114 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 A0A1B0GX51 115 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 FABP5P3A8MUU1 101 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 VCYO14598 125 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 GCGP01275 180 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 IGLC2P0DOY2 106 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 CXCL2P19875 107 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 ZNF138P52744 262 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 PMVKQ15126 192 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 TMEM183BQ1AE95 376 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 KHDC3LQ587J8 217 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 CFAP126Q5VTH2 177 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 GGNBP1Q5YKI7 109 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms