RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C11orf86A6NJI1 115 aa14.05□□□□□ -0.16
VIM-203ENST00000469543 KIR2DL4Q99706 377 aa14.05□□□□□ -0.16
VIM-203ENST00000469543 PRADC1Q9BSG0 188 aa14.05□□□□□ -0.16
VIM-203ENST00000469543 OR11H12B2RN74 326 aa14.04□□□□□ -0.16
VIM-203ENST00000469543 VCYO14598 125 aa14.04□□□□□ -0.16
VIM-203ENST00000469543 UFSP1Q6NVU6 142 aa14.04□□□□□ -0.16
VIM-203ENST00000469543 OR11H2Q8NH07 326 aa14.04□□□□□ -0.16
VIM-203ENST00000469543 HIST1H4GQ99525 98 aa14.04□□□□□ -0.16
VIM-203ENST00000469543 IGLV4-69A0A075B6H9 119 aa14.04□□□□□ -0.16
VIM-203ENST00000469543 SAMD13Q5VXD3 122 aa14.04□□□□□ -0.16
VIM-203ENST00000469543 A0A1W2PPM0 123 aa14.03□□□□□ -0.16
VIM-203ENST00000469543 A0A1W2PRX2 142 aa14.03□□□□□ -0.16
VIM-203ENST00000469543 FOXI2Q6ZQN5 318 aa14.03□□□□□ -0.16
VIM-203ENST00000469543 PPP1R17O96001 155 aa14.03□□□□□ -0.16
VIM-203ENST00000469543 SAMD5Q5TGI4 173 aa14.03□□□□□ -0.16
VIM-203ENST00000469543 PHLDA1Q8WV24 401 aaPredicted RBP14.03□□□□□ -0.16
VIM-203ENST00000469543 PLEKHB2Q96CS7 222 aa14.03□□□□□ -0.16
VIM-203ENST00000469543 RNF152Q8N8N0 203 aa14.02□□□□□ -0.16
VIM-203ENST00000469543 MYMXA0A1B0GTQ4 84 aa14.02□□□□□ -0.17
VIM-203ENST00000469543 SAP30O75446 220 aa14.02□□□□□ -0.17
VIM-203ENST00000469543 ODF3Q96PU9 254 aa14.02□□□□□ -0.17
VIM-203ENST00000469543 TM2D2Q9BX73 214 aa14.02□□□□□ -0.17
VIM-203ENST00000469543 TRBV27A0A0K0K1C4 114 aa14.01□□□□□ -0.17
VIM-203ENST00000469543 ZNRF2Q8NHG8 242 aa14.01□□□□□ -0.17
VIM-203ENST00000469543 SPCS1Q9Y6A9 102 aa14.01□□□□□ -0.17
VIM-203ENST00000469543 OCIAD2Q56VL3 154 aa14.01□□□□□ -0.17
VIM-203ENST00000469543 LINC01619G3V211 115 aa14□□□□□ -0.17
VIM-203ENST00000469543 H3BMM0 161 aa14□□□□□ -0.17
VIM-203ENST00000469543 K7EP34 96 aa14□□□□□ -0.17
VIM-203ENST00000469543 SYT8Q8NBV8 401 aa14□□□□□ -0.17
VIM-203ENST00000469543 PCP4P48539 62 aa13.99□□□□□ -0.17
VIM-203ENST00000469543 FASNP49327 2511 aaKnown RBP13.99□□□□□ -0.17
VIM-203ENST00000469543 ZNF815PA8K554 130 aa13.99□□□□□ -0.17
VIM-203ENST00000469543 Q6ZSN1 163 aa13.99□□□□□ -0.17
VIM-203ENST00000469543 UNC79Q9P2D8 2635 aa13.99□□□□□ -0.17
VIM-203ENST00000469543 TMEM170BQ5T4T1 132 aa13.98□□□□□ -0.17
VIM-203ENST00000469543 E9PLD3 99 aa13.98□□□□□ -0.17
VIM-203ENST00000469543 PMVKQ15126 192 aa13.98□□□□□ -0.17
VIM-203ENST00000469543 CEMP1Q6PRD7 247 aaPredicted RBP13.98□□□□□ -0.17
VIM-203ENST00000469543 Q6ZSV7 163 aa13.98□□□□□ -0.17
VIM-203ENST00000469543 GTF2H5Q6ZYL4 71 aa13.98□□□□□ -0.17
VIM-203ENST00000469543 HECTD1Q9ULT8 2610 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 IGHV3-64A0A075B6Q5 118 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 TSPEAR-AS2P59090 65 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 TRBV7-3A0A075B6L6 115 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 SCGB2A2Q13296 93 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 C12orf74Q32Q52 190 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 SCGB1D4Q6XE38 83 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 Q8N2B8 174 aa13.97□□□□□ -0.17
VIM-203ENST00000469543 SPAG8Q99932 426 aaPredicted RBP13.97□□□□□ -0.17
VIM-203ENST00000469543 FABP2P12104 132 aa13.96□□□□□ -0.17
VIM-203ENST00000469543 ESM1Q9NQ30 184 aa13.96□□□□□ -0.17
VIM-203ENST00000469543 TRBV6-5A0A0K0K1A5 114 aa13.96□□□□□ -0.18
VIM-203ENST00000469543 RNASE13Q5GAN3 156 aaKnown RBP13.96□□□□□ -0.18
VIM-203ENST00000469543 SFTA2Q6UW10 78 aa13.96□□□□□ -0.18
VIM-203ENST00000469543 MAP6D1Q9H9H5 199 aa13.96□□□□□ -0.18
VIM-203ENST00000469543 RPL32P62910 135 aaKnown RBP13.95□□□□□ -0.18
VIM-203ENST00000469543 MTURNQ8N3F0 131 aa13.95□□□□□ -0.18
VIM-203ENST00000469543 DEFB114Q30KQ6 69 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 TRPT1Q86TN4 253 aaKnown RBP13.94□□□□□ -0.18
VIM-203ENST00000469543 DYNLRB2Q8TF09 96 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 C4orf3Q8WVX3 66 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 CBY1Q9Y3M2 126 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 NBEAL2Q6ZNJ1 2754 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 IGHV3OR16-12A0A075B7B8 117 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 RIPPLY3P57055 190 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 XCL2Q9UBD3 114 aa13.94□□□□□ -0.18
VIM-203ENST00000469543 IGLL5B9A064 214 aa13.93□□□□□ -0.18
VIM-203ENST00000469543 DNAJC9-AS1A6NH13 148 aa13.93□□□□□ -0.18
VIM-203ENST00000469543 TRGV11A0A075B6L2 103 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 RAX2Q96IS3 184 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 LINC01587Q99440 93 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 AZU1P20160 251 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 LRRC75A-AS1Q8N1F1 130 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 TIMM17AQ99595 171 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 MRPL16Q9NX20 251 aaKnown RBP13.92□□□□□ -0.18
VIM-203ENST00000469543 PEMTQ9UBM1 199 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 FN1P02751 2386 aaKnown RBP13.92□□□□□ -0.18
VIM-203ENST00000469543 VWFP04275 2813 aa13.92□□□□□ -0.18
VIM-203ENST00000469543 I3L3M4 83 aa13.91□□□□□ -0.18
VIM-203ENST00000469543 SRSF9Q13242 221 aaKnown RBP eCLIP13.91□□□□□ -0.18
VIM-203ENST00000469543 C20orf203Q8NBC4 194 aa13.91□□□□□ -0.18
VIM-203ENST00000469543 IGHV3-38A0A0C4DH36 116 aa13.91□□□□□ -0.18
VIM-203ENST00000469543 TMEM141Q96I45 108 aa13.91□□□□□ -0.18
VIM-203ENST00000469543 CD28P10747 220 aa13.9□□□□□ -0.18
VIM-203ENST00000469543 GCN1Q92616 2671 aaKnown RBP13.9□□□□□ -0.18
VIM-203ENST00000469543 A0A0J9YXV3 536 aa13.9□□□□□ -0.18
VIM-203ENST00000469543 H3BMG7 143 aa13.9□□□□□ -0.18
VIM-203ENST00000469543 ZNF479Q96JC4 524 aa13.9□□□□□ -0.18
VIM-203ENST00000469543 VPS25Q9BRG1 176 aa13.9□□□□□ -0.18
VIM-203ENST00000469543 ANK3Q12955 4377 aaKnown RBP13.89□□□□□ -0.19
VIM-203ENST00000469543 FAM104AQ969W3 186 aa13.89□□□□□ -0.19
VIM-203ENST00000469543 TAL2Q16559 108 aa13.88□□□□□ -0.19
VIM-203ENST00000469543 NSUN5P1Q3KNT7 163 aa13.88□□□□□ -0.19
VIM-203ENST00000469543 ODF3L2Q3SX64 289 aa13.88□□□□□ -0.19
VIM-203ENST00000469543 HIVEP2P31629 2446 aa13.87□□□□□ -0.19
VIM-203ENST00000469543 IGLV4-3A0A075B6K6 122 aa13.87□□□□□ -0.19
VIM-203ENST00000469543 A0A0J9YY99 117 aa13.87□□□□□ -0.19
VIM-203ENST00000469543 CFAP126Q5VTH2 177 aa13.87□□□□□ -0.19
VIM-203ENST00000469543 CITED2Q99967 270 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms