RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 AQP12AQ8IXF9 295 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 ZNF485Q8NCK3 441 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 DEDD2Q8WXF8 326 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 CCDC124Q96CT7 223 aaKnown RBP1.21□□□□□ -2.22
USP40-211ENST00000464956 ZNF486Q96H40 463 aaPredicted RBP1.21□□□□□ -2.22
USP40-211ENST00000464956 SOSTQ9BQB4 213 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 MARVELD1Q9BSK0 173 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 NDFIP1Q9BT67 221 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 LYRM2Q9NU23 88 aaPredicted RBP1.21□□□□□ -2.22
USP40-211ENST00000464956 TMEM14CQ9P0S9 112 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 RBM12B-AS1Q9P1G2 102 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 COPZ2Q9P299 210 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 TRAV18A0A075B6X5 111 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 NOTOA8MTQ0 251 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 PRSS46E5RG02 174 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 NDUFC2-KCTD14E9PQ53 114 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 G3V3Q6 166 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 H3BMQ9 156 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 M0R381 172 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 CIB2O75838 187 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 MT1BP07438 61 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 IAPPP10997 89 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 NKX2-5P52952 324 aaPredicted RBP1.2□□□□□ -2.22
USP40-211ENST00000464956 TAS2R19P59542 299 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 SLC38A11Q08AI6 406 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 PPP1R1AQ13522 171 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 MOBPQ13875 183 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 SMCO1Q147U7 214 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 C9orf129Q5T035 196 aaKnown RBP1.2□□□□□ -2.22
USP40-211ENST00000464956 RNASEKQ6P5S7 137 aaKnown RBP1.2□□□□□ -2.22
USP40-211ENST00000464956 SSBP3-AS1Q7Z2R9 100 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 FAM19A1Q7Z5A9 133 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 PRNTQ86SH4 94 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 SPATA24Q86W54 205 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 CBLN2Q8IUK8 224 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 ZFP82Q8N141 532 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 OR1L4Q8NGR5 311 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 RHOXF1Q8NHV9 184 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 MPLKIPQ8TAP9 179 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 DYNC2LI1Q8TCX1 351 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 TMEM80Q96HE8 168 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 SGK494Q96LW2 274 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 SPRR4Q96PI1 79 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 CIB3Q96Q77 187 aaPredicted RBP1.2□□□□□ -2.22
USP40-211ENST00000464956 PFDN5Q99471 154 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 LIMD2Q9BT23 127 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 KRTAP4-7Q9BYR0 210 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 NMES1Q9C002 83 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 C11orf1Q9H5F2 150 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 SHPKQ9UHJ6 478 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 AP4S1Q9Y587 144 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 ALG5Q9Y673 324 aa1.2□□□□□ -2.22
USP40-211ENST00000464956 H3BVH4 76 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 MED6O75586 246 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 NPSP0C0P6 89 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 PYYP10082 97 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 TPT1P13693 172 aaKnown RBP1.19□□□□□ -2.22
USP40-211ENST00000464956 ZNF80P51504 273 aaPredicted RBP1.19□□□□□ -2.22
USP40-211ENST00000464956 UBE2G2P60604 165 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 RBM3P98179 157 aaKnown RBP1.19□□□□□ -2.22
USP40-211ENST00000464956 MXD1Q05195 221 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 PNRC1Q12796 327 aaPredicted RBP1.19□□□□□ -2.22
USP40-211ENST00000464956 COTL1Q14019 142 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 SPANXN5Q5MJ07 72 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 FAM19A3Q7Z5A8 133 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 SELENOHQ8IZQ5 122 aaKnown RBP1.19□□□□□ -2.22
USP40-211ENST00000464956 C15orf40Q8WUR7 153 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 HIGD2AQ9BW72 106 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 NDUFA13Q9P0J0 144 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 C11orf21Q9P2W6 132 aa1.19□□□□□ -2.22
USP40-211ENST00000464956 STRAPQ9Y3F4 350 aaKnown RBP1.19□□□□□ -2.22
USP40-211ENST00000464956 CHTOPQ9Y3Y2 248 aaKnown RBP1.19□□□□□ -2.22
USP40-211ENST00000464956 IGLV9-49A0A0B4J1Y8 123 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 GAGE10A6NGK3 116 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 GCGP01275 180 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 NBEAP1P0C6P0 100 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 ARMS2P0C7Q2 107 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 FCGR1AP12314 374 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 ZNF25P17030 456 aaPredicted RBP1.18□□□□□ -2.22
USP40-211ENST00000464956 FGF7P21781 194 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 MYL9P24844 172 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 RRAS2P62070 204 aaPredicted RBP1.18□□□□□ -2.22
USP40-211ENST00000464956 RANP62826 216 aaKnown RBP1.18□□□□□ -2.22
USP40-211ENST00000464956 LINC01559Q495D7 138 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 C10orf91Q5T1B1 145 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 C10orf25Q5T742 122 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 UNQ6190/PRO20217Q6UXQ8 127 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 Q6ZNX1 250 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 CLVS1Q8IUQ0 354 aaPredicted RBP1.18□□□□□ -2.22
USP40-211ENST00000464956 CMTM2Q8TAZ6 248 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 TMEM101Q96IK0 257 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 LINC00167Q96N53 147 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 CYTL1Q9NRR1 136 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 TMEM242Q9NWH2 141 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 RHBDL2Q9NX52 303 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 C6orf48Q9UBA6 75 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 GPR132Q9UNW8 380 aa1.18□□□□□ -2.22
USP40-211ENST00000464956 IGKV3D-20A0A0C4DH25 116 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 TRBV30A0A0K0K1B3 111 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 RAB19A4D1S5 217 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms