RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 NOTCH2Q04721 2471 aa13.57□□□□□ -0.24
SEMA3B-209ENST00000456560 TRBV27A0A0K0K1C4 114 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 GAGE12HA6NDE8 117 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 LINC01549A6NIU2 74 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 IGIPA6NJ69 53 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 DEFB136Q30KP8 78 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 ETDBQ3ZM63 59 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 GAGE13Q4V321 117 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 SDHAF1A6NFY7 115 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 LINC01619G3V211 115 aa13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 MORN3Q6PF18 240 aaPredicted RBP13.56□□□□□ -0.24
SEMA3B-209ENST00000456560 A8MTW9 85 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 M0QY20 66 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 SMAGPQ0VAQ4 97 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 MTURNQ8N3F0 131 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 WFDC11Q8NEX6 87 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 TP53TG1Q9Y2A0 90 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 ITPR3Q14573 2671 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 FAM74A4Q5TZK3 123 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 KIR2DL4Q99706 377 aa13.55□□□□□ -0.24
SEMA3B-209ENST00000456560 AKAP9Q99996 3911 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 A0A1B0GWB2 263 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 SCGB1A1P11684 91 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 SPAG8Q99932 426 aaPredicted RBP13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 CREBBPQ92793 2442 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 TRGV11A0A075B6L2 103 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 KNCNA6PVL3 124 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 RBMY1A1P0DJD3 496 aaKnown RBP13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 RBMY1CP0DJD4 496 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 SCGB2A2Q13296 93 aa13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 RBMY1FQ15415 496 aaKnown RBP13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 ZNF256Q9Y2P7 627 aaPredicted RBP13.54□□□□□ -0.24
SEMA3B-209ENST00000456560 TRAV2A0A0B4J234 112 aa13.53□□□□□ -0.24
SEMA3B-209ENST00000456560 C4orf3Q8WVX3 66 aa13.53□□□□□ -0.24
SEMA3B-209ENST00000456560 TMEM141Q96I45 108 aa13.53□□□□□ -0.24
SEMA3B-209ENST00000456560 ZNF56Q15929 161 aa13.52□□□□□ -0.24
SEMA3B-209ENST00000456560 CIDEAO60543 219 aa13.52□□□□□ -0.25
SEMA3B-209ENST00000456560 DEFB131AP59861 70 aa13.52□□□□□ -0.25
SEMA3B-209ENST00000456560 RPL39P62891 51 aaKnown RBP13.52□□□□□ -0.25
SEMA3B-209ENST00000456560 DEFB104AQ8WTQ1 72 aa13.52□□□□□ -0.25
SEMA3B-209ENST00000456560 TIMM17AQ99595 171 aa13.52□□□□□ -0.25
SEMA3B-209ENST00000456560 PRADC1Q9BSG0 188 aa13.52□□□□□ -0.25
SEMA3B-209ENST00000456560 PRO0461Q9UI25 63 aa13.52□□□□□ -0.25
SEMA3B-209ENST00000456560 IGLV4-69A0A075B6H9 119 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 ZNF876PQ49A33 203 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 TEX15Q9BXT5 2789 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 H3BMM0 161 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 TRPT1Q86TN4 253 aaKnown RBP13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 SPATA25Q9BR10 227 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 PGPEP1Q9NXJ5 209 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 PEMTQ9UBM1 199 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 SORL1Q92673 2214 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 MXRA5Q9NR99 2828 aa13.51□□□□□ -0.25
SEMA3B-209ENST00000456560 RBMY1BA6NDE4 496 aaKnown RBP13.5□□□□□ -0.25
SEMA3B-209ENST00000456560 RBMY1EA6NEQ0 496 aaKnown RBP13.5□□□□□ -0.25
SEMA3B-209ENST00000456560 ZNF815PA8K554 130 aa13.5□□□□□ -0.25
SEMA3B-209ENST00000456560 RBMY1DP0C7P1 496 aaKnown RBP13.5□□□□□ -0.25
SEMA3B-209ENST00000456560 PMVKQ15126 192 aa13.5□□□□□ -0.25
SEMA3B-209ENST00000456560 FLNAP21333 2647 aaKnown RBP13.5□□□□□ -0.25
SEMA3B-209ENST00000456560 TMEM61Q8N0U2 210 aa13.49□□□□□ -0.25
SEMA3B-209ENST00000456560 TMEM86BQ8N661 226 aa13.49□□□□□ -0.25
SEMA3B-209ENST00000456560 DUX3Q96PT4 197 aa13.49□□□□□ -0.25
SEMA3B-209ENST00000456560 SCGB1D4Q6XE38 83 aa13.49□□□□□ -0.25
SEMA3B-209ENST00000456560 MRPL16Q9NX20 251 aaKnown RBP13.49□□□□□ -0.25
SEMA3B-209ENST00000456560 TLN2Q9Y4G6 2542 aa13.49□□□□□ -0.25
SEMA3B-209ENST00000456560 C11orf86A6NJI1 115 aa13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 RHOHQ15669 191 aa13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 DLX4Q92988 240 aaPredicted RBP13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 TMEM238LA0A1B0GVL6 79 aa13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 A6NJY4 79 aa13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 INSL3P51460 131 aa13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 NSUN5P1Q3KNT7 163 aa13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 PAPPA-AS1Q5QFB9 102 aa13.48□□□□□ -0.25
SEMA3B-209ENST00000456560 PLEKHB2Q96CS7 222 aa13.47□□□□□ -0.25
SEMA3B-209ENST00000456560 FLNBO75369 2602 aaKnown RBP13.47□□□□□ -0.25
SEMA3B-209ENST00000456560 MYO9AB2RTY4 2548 aa13.47□□□□□ -0.25
SEMA3B-209ENST00000456560 SRSF9Q13242 221 aaKnown RBP eCLIP13.47□□□□□ -0.25
SEMA3B-209ENST00000456560 EDA2RQ9HAV5 297 aa13.47□□□□□ -0.25
SEMA3B-209ENST00000456560 ACANP16112 2415 aa13.46□□□□□ -0.25
SEMA3B-209ENST00000456560 P0DMU3 169 aa13.46□□□□□ -0.25
SEMA3B-209ENST00000456560 FAM231AP0DMU4 169 aa13.46□□□□□ -0.25
SEMA3B-209ENST00000456560 FAM231CP0DMU5 169 aa13.46□□□□□ -0.25
SEMA3B-209ENST00000456560 Q6ZSV7 163 aa13.46□□□□□ -0.25
SEMA3B-209ENST00000456560 APOMO95445 188 aa13.45□□□□□ -0.26
SEMA3B-209ENST00000456560 DEFB114Q30KQ6 69 aa13.45□□□□□ -0.26
SEMA3B-209ENST00000456560 KLHL30-AS1Q8NEE0 82 aa13.45□□□□□ -0.26
SEMA3B-209ENST00000456560 MAP6D1Q9H9H5 199 aa13.45□□□□□ -0.26
SEMA3B-209ENST00000456560 I3L3M4 83 aa13.44□□□□□ -0.26
SEMA3B-209ENST00000456560 KHDC1LQ5JSQ8 128 aa13.44□□□□□ -0.26
SEMA3B-209ENST00000456560 EMP1P54849 157 aa13.44□□□□□ -0.26
SEMA3B-209ENST00000456560 HIST2H2BDQ6DRA6 164 aa13.44□□□□□ -0.26
SEMA3B-209ENST00000456560 LOC107984156A0A0G2JMH3 177 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 SFTA2Q6UW10 78 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 ARL17AQ8IVW1 177 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 C20orf203Q8NBC4 194 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 DYNLRB2Q8TF09 96 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 PSMB2P49721 201 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 UBE2D1P51668 147 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 CFAP126Q5VTH2 177 aa13.43□□□□□ -0.26
SEMA3B-209ENST00000456560 ZNRF2Q8NHG8 242 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms