RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 GAS8-AS1O95177 125 aa14.54□□□□□ -0.08
CHD3-204ENST00000439235 TNFRSF6BO95407 300 aa14.54□□□□□ -0.08
CHD3-204ENST00000439235 NPYP01303 97 aa14.54□□□□□ -0.08
CHD3-204ENST00000439235 P0DMU3 169 aa14.54□□□□□ -0.08
CHD3-204ENST00000439235 FAM231AP0DMU4 169 aa14.54□□□□□ -0.08
CHD3-204ENST00000439235 FAM231CP0DMU5 169 aa14.54□□□□□ -0.08
CHD3-204ENST00000439235 TNFRSF18Q9Y5U5 241 aa14.54□□□□□ -0.08
CHD3-204ENST00000439235 TRBV6-5A0A0K0K1A5 114 aa14.53□□□□□ -0.08
CHD3-204ENST00000439235 RPL36AP83881 106 aaKnown RBP14.53□□□□□ -0.08
CHD3-204ENST00000439235 NEXN-AS1Q8NBZ9 246 aa14.53□□□□□ -0.08
CHD3-204ENST00000439235 RPL36ALQ969Q0 106 aaKnown RBP14.53□□□□□ -0.08
CHD3-204ENST00000439235 TRAV26-1A0A087WT03 109 aa14.52□□□□□ -0.09
CHD3-204ENST00000439235 C20orf78Q9BR46 151 aa14.52□□□□□ -0.09
CHD3-204ENST00000439235 MAP1LC3AQ9H492 121 aa14.52□□□□□ -0.09
CHD3-204ENST00000439235 ST20Q9HBF5 79 aa14.52□□□□□ -0.09
CHD3-204ENST00000439235 A0A0J9YY99 117 aa14.51□□□□□ -0.09
CHD3-204ENST00000439235 H3BNG1 76 aa14.51□□□□□ -0.09
CHD3-204ENST00000439235 SUMO2P61956 95 aaKnown RBP14.51□□□□□ -0.09
CHD3-204ENST00000439235 PHLDA1Q8WV24 401 aaPredicted RBP14.51□□□□□ -0.09
CHD3-204ENST00000439235 TRBV7-3A0A075B6L6 115 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 GAGE12JA6NER3 117 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 GYPEP15421 78 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 GAGE1Q13065 139 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 GAGE4Q13068 117 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 GAGE5Q13069 117 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 GAGE13Q4V321 117 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 VSIG2Q96IQ7 327 aa14.5□□□□□ -0.09
CHD3-204ENST00000439235 LOC100131303A0A0U1RQF7 123 aa14.49□□□□□ -0.09
CHD3-204ENST00000439235 RAB5BP61020 215 aa14.49□□□□□ -0.09
CHD3-204ENST00000439235 ZNRF2Q8NHG8 242 aa14.49□□□□□ -0.09
CHD3-204ENST00000439235 SDHAF1A6NFY7 115 aa14.48□□□□□ -0.09
CHD3-204ENST00000439235 RPL32P62910 135 aaKnown RBP14.48□□□□□ -0.09
CHD3-204ENST00000439235 C18orf32Q8TCD1 76 aa14.48□□□□□ -0.09
CHD3-204ENST00000439235 SMIM2Q9BVW6 85 aa14.48□□□□□ -0.09
CHD3-204ENST00000439235 ICOSQ9Y6W8 199 aa14.48□□□□□ -0.09
CHD3-204ENST00000439235 PRSS47A8MTI9 375 aa14.47□□□□□ -0.09
CHD3-204ENST00000439235 TMEM70Q9BUB7 260 aa14.47□□□□□ -0.09
CHD3-204ENST00000439235 Q9UF83 564 aa14.47□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BKO60814 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BJP06899 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 LINC00694P0DN24 101 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 PMCHP20382 165 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BOP23527 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BBP33778 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BDP58876 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 UBE2D3P61077 147 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BCP62807 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 UBE2D2P62837 147 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 MRPL23Q16540 153 aaKnown RBP14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST2H2BEQ16778 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.46□□□□□ -0.09
CHD3-204ENST00000439235 SH2D6Q7Z4S9 175 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BHQ93079 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BNQ99877 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 HIST1H2BMQ99879 126 aa14.46□□□□□ -0.09
CHD3-204ENST00000439235 NXT2Q9NPJ8 142 aaKnown RBP14.46□□□□□ -0.09
CHD3-204ENST00000439235 LOC389332A0A1B0GUA5 103 aa14.45□□□□□ -0.1
CHD3-204ENST00000439235 VCYO14598 125 aa14.45□□□□□ -0.1
CHD3-204ENST00000439235 POLR2KP53803 58 aaKnown RBP14.45□□□□□ -0.1
CHD3-204ENST00000439235 IQCJQ1A5X6 159 aa14.45□□□□□ -0.1
CHD3-204ENST00000439235 DAZ4Q86SG3 579 aaKnown RBP14.45□□□□□ -0.1
CHD3-204ENST00000439235 DAZ3Q9NR90 486 aaKnown RBP14.45□□□□□ -0.1
CHD3-204ENST00000439235 TRBV27A0A0K0K1C4 114 aa14.44□□□□□ -0.1
CHD3-204ENST00000439235 NUPR2A6NF83 97 aa14.44□□□□□ -0.1
CHD3-204ENST00000439235 Q0VG73 95 aa14.44□□□□□ -0.1
CHD3-204ENST00000439235 C15orf53Q8NAA6 179 aa14.44□□□□□ -0.1
CHD3-204ENST00000439235 PRSS3P2Q8NHM4 247 aa14.44□□□□□ -0.1
CHD3-204ENST00000439235 I3L3M4 83 aa14.43□□□□□ -0.1
CHD3-204ENST00000439235 CEMP1Q6PRD7 247 aaPredicted RBP14.43□□□□□ -0.1
CHD3-204ENST00000439235 Q8N8P6 123 aa14.43□□□□□ -0.1
CHD3-204ENST00000439235 ATP6V0E2Q8NHE4 81 aa14.43□□□□□ -0.1
CHD3-204ENST00000439235 KIR2DL4Q99706 377 aa14.43□□□□□ -0.1
CHD3-204ENST00000439235 FA2HQ7L5A8 372 aa14.42□□□□□ -0.1
CHD3-204ENST00000439235 BAGE3Q86Y29 109 aa14.42□□□□□ -0.1
CHD3-204ENST00000439235 A0A096LPF7 62 aa14.41□□□□□ -0.1
CHD3-204ENST00000439235 IGLL5B9A064 214 aa14.41□□□□□ -0.1
CHD3-204ENST00000439235 TCAPO15273 167 aa14.41□□□□□ -0.1
CHD3-204ENST00000439235 NUDT3O95989 172 aa14.41□□□□□ -0.1
CHD3-204ENST00000439235 IFI27P40305 119 aaPredicted RBP14.41□□□□□ -0.1
CHD3-204ENST00000439235 NEGR1Q7Z3B1 354 aa14.41□□□□□ -0.1
CHD3-204ENST00000439235 WWC2-AS2Q96NR7 200 aa14.41□□□□□ -0.1
CHD3-204ENST00000439235 KLK5Q9Y337 293 aaPredicted RBP14.41□□□□□ -0.1
CHD3-204ENST00000439235 IGLV2-18A0A075B6J9 118 aa14.4□□□□□ -0.1
CHD3-204ENST00000439235 IGHV3-38A0A0C4DH36 116 aa14.4□□□□□ -0.1
CHD3-204ENST00000439235 COTL1Q14019 142 aa14.4□□□□□ -0.1
CHD3-204ENST00000439235 TMEM97Q5BJF2 176 aa14.4□□□□□ -0.1
CHD3-204ENST00000439235 COL7A1Q02388 2944 aa14.4□□□□□ -0.1
CHD3-204ENST00000439235 K7EMI3 77 aa14.39□□□□□ -0.11
CHD3-204ENST00000439235 FCER1GP30273 86 aa14.39□□□□□ -0.11
CHD3-204ENST00000439235 RNASEKQ6P5S7 137 aaKnown RBP14.38□□□□□ -0.11
CHD3-204ENST00000439235 NIT1Q86X76 327 aa14.38□□□□□ -0.11
CHD3-204ENST00000439235 TSHBP01222 138 aa14.37□□□□□ -0.11
CHD3-204ENST00000439235 LINC00614P0C842 121 aa14.37□□□□□ -0.11
CHD3-204ENST00000439235 MUC7Q8TAX7 377 aa14.37□□□□□ -0.11
CHD3-204ENST00000439235 CHCHD1Q96BP2 118 aaKnown RBP14.37□□□□□ -0.11
CHD3-204ENST00000439235 GTSF1LQ9H1H1 148 aa14.37□□□□□ -0.11
CHD3-204ENST00000439235 AP5S1Q9NUS5 200 aa14.37□□□□□ -0.11
CHD3-204ENST00000439235 LINC01546A6NGU7 62 aa14.36□□□□□ -0.11
CHD3-204ENST00000439235 NDUFA6P56556 154 aa14.36□□□□□ -0.11
CHD3-204ENST00000439235 ORMDL2Q53FV1 153 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms