RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 KLLNB2CW77 178 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 F8VRH5 84 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 SMIM13P0DJ93 91 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 MED14OSP0DP75 135 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 ZNF418Q8TF45 676 aaPredicted RBP7.95□□□□□ -1.14
CUX1-205ENST00000425244 J3QR89 54 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 RPL32P62910 135 aaKnown RBP7.95□□□□□ -1.14
CUX1-205ENST00000425244 Q6ZSV7 163 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 NHP2Q9NX24 153 aaKnown RBP7.95□□□□□ -1.14
CUX1-205ENST00000425244 HIGD1BQ9P298 99 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 SPCS1Q9Y6A9 102 aa7.95□□□□□ -1.14
CUX1-205ENST00000425244 SMIM20Q8N5G0 67 aa7.94□□□□□ -1.14
CUX1-205ENST00000425244 ERG28Q9UKR5 140 aa7.94□□□□□ -1.14
CUX1-205ENST00000425244 CYSRT1A8MQ03 144 aa7.94□□□□□ -1.14
CUX1-205ENST00000425244 SNRPD3P62318 126 aaKnown RBP7.94□□□□□ -1.14
CUX1-205ENST00000425244 TRAV12-1A0A0B4J245 112 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 HLA-DRB4P13762 266 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 GAGE5Q13069 117 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 GAGE6Q13070 117 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 SPINK13Q1W4C9 94 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 DEFB136Q30KP8 78 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 SUMO4Q6EEV6 95 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 C18orf65Q6ZTR6 163 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 NEXN-AS1Q8NBZ9 246 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 BAALCQ8WXS3 180 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 HLA-DRB4X5D2U9 266 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 A0A1W2PPM0 123 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 PRSS29PA6NIE9 313 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 DUSP14O95147 198 aaKnown RBP7.93□□□□□ -1.14
CUX1-205ENST00000425244 EMP1P54849 157 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 SAMD5Q5TGI4 173 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 DUX3Q96PT4 197 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 MDFICQ9P1T7 246 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 C2CD3Q4AC94 2353 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 MAST4O15021 2626 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 PPP1R17O96001 155 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 FABP2P12104 132 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 LINC00315P59091 139 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 CEND1Q8N111 149 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 HIST1H4GQ99525 98 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 VCX2Q9H322 139 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 TP53TG1Q9Y2A0 90 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 KIF25-AS1Q9Y6Z4 181 aa7.93□□□□□ -1.14
CUX1-205ENST00000425244 IGHV4OR15-8A0A075B7B6 117 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 A0A087WW49 117 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 A0A1W2PRX2 142 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 NXPH4O95158 308 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 TMEM86BQ8N661 226 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 A0A0J9YX75 114 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 HTN1P15515 57 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 ZNF56Q15929 161 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 CYSLTR1Q9Y271 337 aa7.92□□□□□ -1.14
CUX1-205ENST00000425244 ZNF256Q9Y2P7 627 aaPredicted RBP7.92□□□□□ -1.14
CUX1-205ENST00000425244 HOXD3P31249 432 aaPredicted RBP7.91□□□□□ -1.14
CUX1-205ENST00000425244 RPL39P62891 51 aaKnown RBP7.91□□□□□ -1.14
CUX1-205ENST00000425244 Q8N1Y9 231 aa7.91□□□□□ -1.14
CUX1-205ENST00000425244 TENM1Q9UKZ4 2725 aa7.91□□□□□ -1.14
CUX1-205ENST00000425244 KIR2DL4Q99706 377 aa7.91□□□□□ -1.14
CUX1-205ENST00000425244 SPANXB1Q9NS25 103 aaPredicted RBP7.91□□□□□ -1.14
CUX1-205ENST00000425244 IGHV3-16A0A0C4DH30 117 aa7.9□□□□□ -1.14
CUX1-205ENST00000425244 SDHAF1A6NFY7 115 aa7.9□□□□□ -1.14
CUX1-205ENST00000425244 B5MCH6 92 aa7.9□□□□□ -1.14
CUX1-205ENST00000425244 K7EQG2 157 aa7.9□□□□□ -1.14
CUX1-205ENST00000425244 LGALS1P09382 135 aaKnown RBP7.9□□□□□ -1.14
CUX1-205ENST00000425244 HILS1P60008 231 aa7.9□□□□□ -1.14
CUX1-205ENST00000425244 ZFP2Q6ZN57 461 aa7.9□□□□□ -1.14
CUX1-205ENST00000425244 PRADC1Q9BSG0 188 aa7.9□□□□□ -1.14
CUX1-205ENST00000425244 MYMXA0A1B0GTQ4 84 aa7.9□□□□□ -1.15
CUX1-205ENST00000425244 SPAG8Q99932 426 aaPredicted RBP7.9□□□□□ -1.15
CUX1-205ENST00000425244 TM2D2Q9BX73 214 aa7.9□□□□□ -1.15
CUX1-205ENST00000425244 ZNF580Q9UK33 172 aa7.9□□□□□ -1.15
CUX1-205ENST00000425244 VCYO14598 125 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 RNASE1P07998 156 aaKnown RBP7.89□□□□□ -1.15
CUX1-205ENST00000425244 Q8N2B8 174 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 RAX2Q96IS3 184 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 ATRQ13535 2644 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 IGHV1OR15-1A0A075B7D0 117 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 ELANEP08246 267 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 POM121L12Q8N7R1 296 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 SYT8Q8NBV8 401 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 LINC01006Q8NI28 216 aa7.89□□□□□ -1.15
CUX1-205ENST00000425244 ZNF815PA8K554 130 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 TSHBP01222 138 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 POLR2KP53803 58 aaKnown RBP7.88□□□□□ -1.15
CUX1-205ENST00000425244 SCGB1D4Q6XE38 83 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 KLHL30-AS1Q8NEE0 82 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 TMEM89A2RUT3 159 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 KNCNA6PVL3 124 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 SLURP1P55000 103 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 PHLDA1Q8WV24 401 aaPredicted RBP7.88□□□□□ -1.15
CUX1-205ENST00000425244 C9orf85Q96MD7 179 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 C11orf86A6NJI1 115 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 CRYGDP07320 174 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 SPINK8P0C7L1 97 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 CD28P10747 220 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 ZNF876PQ49A33 203 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 UBE2E2Q96LR5 201 aa7.88□□□□□ -1.15
CUX1-205ENST00000425244 E9PLD3 99 aa7.87□□□□□ -1.15
CUX1-205ENST00000425244 C12orf74Q32Q52 190 aa7.87□□□□□ -1.15
CUX1-205ENST00000425244 ANAPC13Q9BS18 74 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms