RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NIT2Q9NQR4 276 aa12.18□□□□□ -0.46
CCDC28B-202ENST00000421922 A0A0J9YWU9 116 aa12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 K7EQD1 137 aa12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 SERF1AO75920 110 aa12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 ATP5G1P05496 136 aa12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 SUMO2P61956 95 aaKnown RBP12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 SNRPEP62304 92 aaKnown RBP12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 NXT2Q9NPJ8 142 aaKnown RBP12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 TNFRSF18Q9Y5U5 241 aa12.17□□□□□ -0.46
CCDC28B-202ENST00000421922 S100A2P29034 98 aa12.16□□□□□ -0.46
CCDC28B-202ENST00000421922 HSBP1O75506 76 aa12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 IFI27P40305 119 aaPredicted RBP12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 RHOHQ15669 191 aa12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 COA6Q5JTJ3 125 aaKnown RBP12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 NIT1Q86X76 327 aa12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 CHCHD1Q96BP2 118 aaKnown RBP12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 DNAJC30Q96LL9 226 aa12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 PRADC1Q9BSG0 188 aa12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 SMIM2Q9BVW6 85 aa12.15□□□□□ -0.46
CCDC28B-202ENST00000421922 LINC00614P0C842 121 aa12.14□□□□□ -0.47
CCDC28B-202ENST00000421922 HTN3P15516 51 aa12.14□□□□□ -0.47
CCDC28B-202ENST00000421922 Q6ZSN1 163 aa12.14□□□□□ -0.47
CCDC28B-202ENST00000421922 Q8N8P6 123 aa12.14□□□□□ -0.47
CCDC28B-202ENST00000421922 AP5S1Q9NUS5 200 aa12.14□□□□□ -0.47
CCDC28B-202ENST00000421922 TRBV10-1A0A0K0K1A3 114 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 TRBV6-5A0A0K0K1A5 114 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 TRBV6-4A0A1B0GX49 114 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 SDHAF1A6NFY7 115 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 P0DMU3 169 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 FAM231AP0DMU4 169 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 FAM231CP0DMU5 169 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 RPL36AP83881 106 aaKnown RBP12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 PDZD11Q5EBL8 140 aa12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 RPL36ALQ969Q0 106 aaKnown RBP12.13□□□□□ -0.47
CCDC28B-202ENST00000421922 FHL2Q14192 279 aa12.12□□□□□ -0.47
CCDC28B-202ENST00000421922 SLC25A29Q8N8R3 303 aa12.12□□□□□ -0.47
CCDC28B-202ENST00000421922 C11orf45Q8TAV5 145 aa12.12□□□□□ -0.47
CCDC28B-202ENST00000421922 C5orf52A6NGY3 159 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 PRSS47A8MTI9 375 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 F5H768 121 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 VCYO14598 125 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 NHLRC4P0CG21 123 aaPredicted RBP12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 HOXA5P20719 270 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 RPL32P62910 135 aaKnown RBP12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 NEXN-AS1Q8NBZ9 246 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 KIR2DL4Q99706 377 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 TMEM70Q9BUB7 260 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 PRO0255Q9UI72 69 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 HHLA3Q9XRX5 114 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 FCER1GP30273 86 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 C12orf74Q32Q52 190 aa12.11□□□□□ -0.47
CCDC28B-202ENST00000421922 TCAPO15273 167 aa12.1□□□□□ -0.47
CCDC28B-202ENST00000421922 PAX4O43316 350 aa12.1□□□□□ -0.47
CCDC28B-202ENST00000421922 AMTP48728 403 aa12.1□□□□□ -0.47
CCDC28B-202ENST00000421922 HIST3H2BBQ8N257 126 aa12.1□□□□□ -0.47
CCDC28B-202ENST00000421922 ZNRF2Q8NHG8 242 aa12.1□□□□□ -0.47
CCDC28B-202ENST00000421922 TMEM18Q96B42 140 aa12.1□□□□□ -0.47
CCDC28B-202ENST00000421922 TRBV7-3A0A075B6L6 115 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 GAGE12JA6NER3 117 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 I3L3M4 83 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 K7EMI3 77 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 ESDP10768 282 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 GAGE1Q13065 139 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 GAGE4Q13068 117 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 GAGE5Q13069 117 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 LAGE3Q14657 143 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 GAGE13Q4V321 117 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 ORMDL2Q53FV1 153 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 NEGR1Q7Z3B1 354 aa12.09□□□□□ -0.47
CCDC28B-202ENST00000421922 CRYBA4P53673 196 aa12.08□□□□□ -0.48
CCDC28B-202ENST00000421922 POLR2KP53803 58 aaKnown RBP12.08□□□□□ -0.48
CCDC28B-202ENST00000421922 LINC00310P59036 64 aa12.08□□□□□ -0.48
CCDC28B-202ENST00000421922 URB1-AS1Q96HZ7 61 aa12.08□□□□□ -0.48
CCDC28B-202ENST00000421922 TRBV27A0A0K0K1C4 114 aa12.07□□□□□ -0.48
CCDC28B-202ENST00000421922 NUPR1O60356 82 aa12.07□□□□□ -0.48
CCDC28B-202ENST00000421922 NANOS2P60321 138 aaKnown RBP12.07□□□□□ -0.48
CCDC28B-202ENST00000421922 TENM3Q9P273 2699 aa12.07□□□□□ -0.48
CCDC28B-202ENST00000421922 IGLV2-18A0A075B6J9 118 aa12.06□□□□□ -0.48
CCDC28B-202ENST00000421922 NUDT3O95989 172 aa12.06□□□□□ -0.48
CCDC28B-202ENST00000421922 GYPEP15421 78 aa12.06□□□□□ -0.48
CCDC28B-202ENST00000421922 COTL1Q14019 142 aa12.06□□□□□ -0.48
CCDC28B-202ENST00000421922 Q6ZTC4 211 aa12.06□□□□□ -0.48
CCDC28B-202ENST00000421922 FAM19A2Q8N3H0 131 aa12.06□□□□□ -0.48
CCDC28B-202ENST00000421922 PHLDA1Q8WV24 401 aaPredicted RBP12.06□□□□□ -0.48
CCDC28B-202ENST00000421922 IGHV1-24A0A0C4DH33 117 aa12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 A0A0J9YY99 117 aa12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 HBDP02042 147 aa12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 FABP4P15090 132 aa12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 G0S2P27469 103 aa12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 PMCHL1Q16048 86 aa12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 DAZ4Q86SG3 579 aaKnown RBP12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 DAZ3Q9NR90 486 aaKnown RBP12.05□□□□□ -0.48
CCDC28B-202ENST00000421922 TRAV26-1A0A087WT03 109 aa12.04□□□□□ -0.48
CCDC28B-202ENST00000421922 IGHV3-38A0A0C4DH36 116 aa12.04□□□□□ -0.48
CCDC28B-202ENST00000421922 LOC100131303A0A0U1RQF7 123 aa12.04□□□□□ -0.48
CCDC28B-202ENST00000421922 BTF3P20290 206 aaKnown RBP12.04□□□□□ -0.48
CCDC28B-202ENST00000421922 UBE2D3P61077 147 aa12.04□□□□□ -0.48
CCDC28B-202ENST00000421922 UBE2D2P62837 147 aa12.04□□□□□ -0.48
CCDC28B-202ENST00000421922 Q9UF83 564 aa12.04□□□□□ -0.48
CCDC28B-202ENST00000421922 LINC01546A6NGU7 62 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms