RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CFAP126Q5VTH2 177 aa6.13□□□□□ -1.43
USP54-203ENST00000418501 RBMY1BA6NDE4 496 aaKnown RBP6.13□□□□□ -1.43
USP54-203ENST00000418501 RBMY1EA6NEQ0 496 aaKnown RBP6.13□□□□□ -1.43
USP54-203ENST00000418501 RBMY1DP0C7P1 496 aaKnown RBP6.13□□□□□ -1.43
USP54-203ENST00000418501 MIFP14174 115 aa6.13□□□□□ -1.43
USP54-203ENST00000418501 POLR2KP53803 58 aaKnown RBP6.13□□□□□ -1.43
USP54-203ENST00000418501 RIPPLY3P57055 190 aa6.13□□□□□ -1.43
USP54-203ENST00000418501 KIF25-AS1Q9Y6Z4 181 aa6.13□□□□□ -1.43
USP54-203ENST00000418501 KALRNO60229 2985 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 SMG1Q96Q15 3661 aaKnown RBP6.12□□□□□ -1.43
USP54-203ENST00000418501 C1orf158Q8N1D5 194 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 MRPS16Q9Y3D3 137 aaKnown RBP6.12□□□□□ -1.43
USP54-203ENST00000418501 ADGRG4Q8IZF6 3080 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 GAGE12BA1L429 117 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 GAGE7O76087 117 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 GAGE12FP0CL80 117 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 GAGE12GP0CL81 117 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 GAGE12IP0CL82 117 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 BOD1L2Q8IYS8 172 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 ATOH7Q8N100 152 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 URB1-AS1Q96HZ7 61 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 OVOL2Q9BRP0 275 aa6.12□□□□□ -1.43
USP54-203ENST00000418501 TRBV7-3A0A075B6L6 115 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 IGHV3-73A0A0B4J1V6 119 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 TRBV6-4A0A1B0GX49 114 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 H7C423 109 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 DAD1P61803 113 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 SPART-AS1P0CW21 52 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 GEMIN7Q9H840 131 aaKnown RBP6.11□□□□□ -1.43
USP54-203ENST00000418501 CHD6Q8TD26 2715 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 SIVA1O15304 175 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 NMUP48645 174 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 EMP1P54849 157 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 A6NDN8 102 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 TMEM238C9JI98 176 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 Q6ZQT7 251 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 COX11Q9Y6N1 276 aa6.11□□□□□ -1.43
USP54-203ENST00000418501 SONP18583 2426 aaKnown RBP6.1□□□□□ -1.43
USP54-203ENST00000418501 IGLV2-18A0A075B6J9 118 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 TRBV25-1A0A075B6N4 114 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 C20orf203Q8NBC4 194 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 C11orf72Q8NBR9 251 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 ZNRF2Q8NHG8 242 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 HELZ2Q9BYK8 2649 aaKnown RBP6.1□□□□□ -1.43
USP54-203ENST00000418501 IGLC3P0DOY3 106 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 IGLL1P15814 213 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 BATFQ16520 125 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 MAJINQ3KP22 176 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 COPS9Q8WXC6 57 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 PLEKHB2Q96CS7 222 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 JPT2Q9H910 190 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 PYGO1Q9Y3Y4 419 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 CFAP47Q6ZTR5 3102 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 TMEM243Q9BU79 118 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 AKAP9Q99996 3911 aa6.1□□□□□ -1.43
USP54-203ENST00000418501 LGALS3P17931 250 aaKnown RBP6.09□□□□□ -1.43
USP54-203ENST00000418501 OR5A1Q8NGJ0 315 aa6.09□□□□□ -1.43
USP54-203ENST00000418501 COX8AP10176 69 aa6.09□□□□□ -1.43
USP54-203ENST00000418501 UNC79Q9P2D8 2635 aa6.09□□□□□ -1.43
USP54-203ENST00000418501 FASNP49327 2511 aaKnown RBP6.09□□□□□ -1.43
USP54-203ENST00000418501 ITPR3Q14573 2671 aa6.09□□□□□ -1.43
USP54-203ENST00000418501 SPRY2O43597 315 aa6.09□□□□□ -1.43
USP54-203ENST00000418501 LINC00315P59091 139 aa6.09□□□□□ -1.43
USP54-203ENST00000418501 TIMM21Q9BVV7 248 aa6.09□□□□□ -1.43
USP54-203ENST00000418501 ZZEF1O43149 2961 aa6.09□□□□□ -1.44
USP54-203ENST00000418501 A6NJY4 79 aa6.09□□□□□ -1.44
USP54-203ENST00000418501 WIPF1O43516 503 aa6.09□□□□□ -1.44
USP54-203ENST00000418501 ATP5G1P05496 136 aa6.09□□□□□ -1.44
USP54-203ENST00000418501 DEFB130BP0DP73 79 aa6.09□□□□□ -1.44
USP54-203ENST00000418501 DEFB130AP0DP74 79 aa6.09□□□□□ -1.44
USP54-203ENST00000418501 ZMAT4Q9H898 229 aa6.09□□□□□ -1.44
USP54-203ENST00000418501 KRTAP10-3P60369 221 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 TMEM170BQ5T4T1 132 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 Q6ZVH6 145 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 MYO9AB2RTY4 2548 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 FLNAP21333 2647 aaKnown RBP6.08□□□□□ -1.44
USP54-203ENST00000418501 ODF1Q14990 250 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 SCGB1D4Q6XE38 83 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 TLN2Q9Y4G6 2542 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 GAGE12JA6NER3 117 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 RBMY1A1P0DJD3 496 aaKnown RBP6.08□□□□□ -1.44
USP54-203ENST00000418501 RBMY1CP0DJD4 496 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 GAGE4Q13068 117 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 GAGE5Q13069 117 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 RBMY1FQ15415 496 aaKnown RBP6.08□□□□□ -1.44
USP54-203ENST00000418501 GAGE13Q4V321 117 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 ZC2HC1BQ5TFG8 222 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 Q6ZTI0 123 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 NEXN-AS1Q8NBZ9 246 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 PRO0255Q9UI72 69 aa6.08□□□□□ -1.44
USP54-203ENST00000418501 LINC00173Q6ZV60 143 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 MRPL35Q9NZE8 188 aaKnown RBP6.07□□□□□ -1.44
USP54-203ENST00000418501 hDV102S1A0JD36 115 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 PRSS29PA6NIE9 313 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 HSD52Q0P140 79 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 C19orf73Q9NVV2 129 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 OCIAD2Q56VL3 154 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 HIST2H2BDQ6DRA6 164 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 BAALCQ8WXS3 180 aa6.07□□□□□ -1.44
USP54-203ENST00000418501 PAX4O43316 350 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms