RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 LINC00476Q8WZB0 136 aa11.55□□□□□ -0.56
TSPAN4-208ENST00000409531 VSIG2Q96IQ7 327 aa11.55□□□□□ -0.56
TSPAN4-208ENST00000409531 PPP1R17O96001 155 aa11.54□□□□□ -0.56
TSPAN4-208ENST00000409531 PPBPP02775 128 aa11.54□□□□□ -0.56
TSPAN4-208ENST00000409531 GYPEP15421 78 aa11.54□□□□□ -0.56
TSPAN4-208ENST00000409531 RPL36AP83881 106 aaKnown RBP11.54□□□□□ -0.56
TSPAN4-208ENST00000409531 MRPL51Q4U2R6 128 aaKnown RBP11.54□□□□□ -0.56
TSPAN4-208ENST00000409531 RPL36ALQ969Q0 106 aaKnown RBP11.54□□□□□ -0.56
TSPAN4-208ENST00000409531 ICOSQ9Y6W8 199 aa11.54□□□□□ -0.56
TSPAN4-208ENST00000409531 TRAV26-2A0A0B4J265 109 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 LY6G6CO95867 125 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 APCSP02743 223 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 CKS2P33552 79 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 MRPL23Q16540 153 aaKnown RBP11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 SH2D6Q7Z4S9 175 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 DNAJC30Q96LL9 226 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 NIT2Q9NQR4 276 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 APLNQ9ULZ1 77 aa11.53□□□□□ -0.56
TSPAN4-208ENST00000409531 ORMDL3Q8N138 153 aa11.52□□□□□ -0.57
TSPAN4-208ENST00000409531 TRAPPC1Q9Y5R8 145 aa11.52□□□□□ -0.57
TSPAN4-208ENST00000409531 TNFRSF18Q9Y5U5 241 aa11.52□□□□□ -0.57
TSPAN4-208ENST00000409531 TRBV7-3A0A075B6L6 115 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 COLCA2A8K830 154 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 P0DMU3 169 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 FAM231AP0DMU4 169 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 FAM231CP0DMU5 169 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 SRIP30626 198 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 LGALS9CQ6DKI2 356 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 NEXN-AS1Q8NBZ9 246 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 MRPL18Q9H0U6 180 aaKnown RBP11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 LYSTQ99698 3801 aa11.51□□□□□ -0.57
TSPAN4-208ENST00000409531 D6R8Y8 96 aa11.5□□□□□ -0.57
TSPAN4-208ENST00000409531 NUDT3O95989 172 aa11.5□□□□□ -0.57
TSPAN4-208ENST00000409531 FABP9Q0Z7S8 132 aa11.5□□□□□ -0.57
TSPAN4-208ENST00000409531 OR10J3Q5JRS4 329 aa11.5□□□□□ -0.57
TSPAN4-208ENST00000409531 ZNRF2Q8NHG8 242 aa11.5□□□□□ -0.57
TSPAN4-208ENST00000409531 LAMTOR2Q9Y2Q5 125 aa11.5□□□□□ -0.57
TSPAN4-208ENST00000409531 PLECQ15149 4684 aaKnown RBP11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 LOC100131303A0A0U1RQF7 123 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 GAGE12JA6NER3 117 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 PHOX2AO14813 284 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 NCR2O95944 276 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 RAB5AP20339 215 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 RPS10P46783 165 aaKnown RBP11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 GAGE1Q13065 139 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 GAGE4Q13068 117 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 GAGE5Q13069 117 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 GAGE13Q4V321 117 aa11.49□□□□□ -0.57
TSPAN4-208ENST00000409531 A0A096LPF7 62 aa11.48□□□□□ -0.57
TSPAN4-208ENST00000409531 TRBV6-5A0A0K0K1A5 114 aa11.48□□□□□ -0.57
TSPAN4-208ENST00000409531 SMKR1H3BMG3 65 aa11.48□□□□□ -0.57
TSPAN4-208ENST00000409531 NEGR1Q7Z3B1 354 aa11.48□□□□□ -0.57
TSPAN4-208ENST00000409531 RPL39LQ96EH5 51 aaKnown RBP11.48□□□□□ -0.57
TSPAN4-208ENST00000409531 PRELID3AQ96N28 172 aa11.48□□□□□ -0.57
TSPAN4-208ENST00000409531 ST20Q9HBF5 79 aa11.48□□□□□ -0.57
TSPAN4-208ENST00000409531 LINC00694P0DN24 101 aa11.47□□□□□ -0.57
TSPAN4-208ENST00000409531 UBE2D3P61077 147 aa11.47□□□□□ -0.57
TSPAN4-208ENST00000409531 UBE2D2P62837 147 aa11.47□□□□□ -0.57
TSPAN4-208ENST00000409531 ATP6V0E2Q8NHE4 81 aa11.47□□□□□ -0.57
TSPAN4-208ENST00000409531 Q9UF83 564 aa11.47□□□□□ -0.57
TSPAN4-208ENST00000409531 HYDINQ4G0P3 5121 aa11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 GAS8-AS1O95177 125 aa11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 TNFRSF6BO95407 300 aa11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 KIAA1644Q3SXP7 199 aa11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 DAZ4Q86SG3 579 aaKnown RBP11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 NRACQ8N912 160 aa11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 C20orf78Q9BR46 151 aa11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 DAZ3Q9NR90 486 aaKnown RBP11.46□□□□□ -0.57
TSPAN4-208ENST00000409531 SDHAF1A6NFY7 115 aa11.45□□□□□ -0.58
TSPAN4-208ENST00000409531 SUMO2P61956 95 aaKnown RBP11.45□□□□□ -0.58
TSPAN4-208ENST00000409531 NPYP01303 97 aa11.44□□□□□ -0.58
TSPAN4-208ENST00000409531 TMEM97Q5BJF2 176 aa11.44□□□□□ -0.58
TSPAN4-208ENST00000409531 RPL32P62910 135 aaKnown RBP11.43□□□□□ -0.58
TSPAN4-208ENST00000409531 ALKBH7Q9BT30 221 aaPredicted RBP11.43□□□□□ -0.58
TSPAN4-208ENST00000409531 GTSF1LQ9H1H1 148 aa11.43□□□□□ -0.58
TSPAN4-208ENST00000409531 MAP1LC3AQ9H492 121 aa11.43□□□□□ -0.58
TSPAN4-208ENST00000409531 ALMS1Q8TCU4 4167 aa11.43□□□□□ -0.58
TSPAN4-208ENST00000409531 VCYO14598 125 aa11.42□□□□□ -0.58
TSPAN4-208ENST00000409531 TRGC2P03986 189 aa11.42□□□□□ -0.58
TSPAN4-208ENST00000409531 POLR2KP53803 58 aaKnown RBP11.42□□□□□ -0.58
TSPAN4-208ENST00000409531 CCL18P55774 89 aa11.42□□□□□ -0.58
TSPAN4-208ENST00000409531 TIRAPP58753 221 aa11.42□□□□□ -0.58
TSPAN4-208ENST00000409531 TMEM70Q9BUB7 260 aa11.42□□□□□ -0.58
TSPAN4-208ENST00000409531 TRBV27A0A0K0K1C4 114 aa11.41□□□□□ -0.58
TSPAN4-208ENST00000409531 PRSS47A8MTI9 375 aa11.41□□□□□ -0.58
TSPAN4-208ENST00000409531 I3L3M4 83 aa11.41□□□□□ -0.58
TSPAN4-208ENST00000409531 PMCHP20382 165 aa11.41□□□□□ -0.58
TSPAN4-208ENST00000409531 KIR2DL4Q99706 377 aa11.41□□□□□ -0.58
TSPAN4-208ENST00000409531 IGHV3-38A0A0C4DH36 116 aa11.4□□□□□ -0.58
TSPAN4-208ENST00000409531 TCAPO15273 167 aa11.4□□□□□ -0.58
TSPAN4-208ENST00000409531 COTL1Q14019 142 aa11.4□□□□□ -0.58
TSPAN4-208ENST00000409531 LYPD5Q6UWN5 251 aa11.4□□□□□ -0.58
TSPAN4-208ENST00000409531 SMIM2Q9BVW6 85 aa11.4□□□□□ -0.58
TSPAN4-208ENST00000409531 NXT2Q9NPJ8 142 aaKnown RBP11.39□□□□□ -0.59
TSPAN4-208ENST00000409531 ESRGQ1W209 222 aa11.38□□□□□ -0.59
TSPAN4-208ENST00000409531 TRBV6-8A0A0A6YYG3 113 aa11.37□□□□□ -0.59
TSPAN4-208ENST00000409531 FCER1GP30273 86 aa11.37□□□□□ -0.59
TSPAN4-208ENST00000409531 LELP1Q5T871 98 aa11.37□□□□□ -0.59
TSPAN4-208ENST00000409531 TRBV25-1A0A075B6N4 114 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 263 ms