RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 S100A6P06703 90 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 UFSP1Q6NVU6 142 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 BAGE3Q86Y29 109 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 DNAJC30Q96LL9 226 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 WWC2-AS2Q96NR7 200 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 ALKBH7Q9BT30 221 aaPredicted RBP10.07□□□□□ -0.8
SKA1-202ENST00000398452 NIT2Q9NQR4 276 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 PRO0255Q9UI72 69 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 U3KQK5 164 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 TRBV10-1A0A0K0K1A3 114 aa10.06□□□□□ -0.8
SKA1-202ENST00000398452 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.06□□□□□ -0.8
SKA1-202ENST00000398452 M0QY20 66 aa10.06□□□□□ -0.8
SKA1-202ENST00000398452 GATA1P15976 413 aaPredicted RBP10.06□□□□□ -0.8
SKA1-202ENST00000398452 RPL36AP83881 106 aaKnown RBP10.06□□□□□ -0.8
SKA1-202ENST00000398452 FHL2Q14192 279 aa10.06□□□□□ -0.8
SKA1-202ENST00000398452 C12orf74Q32Q52 190 aa10.06□□□□□ -0.8
SKA1-202ENST00000398452 PRSS3P2Q8NHM4 247 aa10.06□□□□□ -0.8
SKA1-202ENST00000398452 RPL36ALQ969Q0 106 aaKnown RBP10.06□□□□□ -0.8
SKA1-202ENST00000398452 C20orf78Q9BR46 151 aa10.06□□□□□ -0.8
SKA1-202ENST00000398452 LOC389332A0A1B0GUA5 103 aa10.05□□□□□ -0.8
SKA1-202ENST00000398452 PAX4O43316 350 aa10.05□□□□□ -0.8
SKA1-202ENST00000398452 PMCHP20382 165 aa10.05□□□□□ -0.8
SKA1-202ENST00000398452 NANOS2P60321 138 aaKnown RBP10.05□□□□□ -0.8
SKA1-202ENST00000398452 RPL39LQ96EH5 51 aaKnown RBP10.05□□□□□ -0.8
SKA1-202ENST00000398452 EDA2RQ9HAV5 297 aa10.05□□□□□ -0.8
SKA1-202ENST00000398452 TENM3Q9P273 2699 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 TRAV10A0A0B4J240 114 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BKO60814 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 NPYP01303 97 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BJP06899 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BOP23527 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BBP33778 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BDP58876 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 SUMO2P61956 95 aaKnown RBP10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BCP62807 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST2H2BEQ16778 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.04□□□□□ -0.8
SKA1-202ENST00000398452 Q6ZTC4 211 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 FA2HQ7L5A8 372 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 SLC25A29Q8N8R3 303 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BHQ93079 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BNQ99877 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 HIST1H2BMQ99879 126 aa10.04□□□□□ -0.8
SKA1-202ENST00000398452 NXT2Q9NPJ8 142 aaKnown RBP10.04□□□□□ -0.8
SKA1-202ENST00000398452 NDUFA6P56556 154 aa10.03□□□□□ -0.8
SKA1-202ENST00000398452 DNAH9Q9NYC9 4486 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 TRBV7-3A0A075B6L6 115 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 DEFB131BA0A096LNP1 70 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 TRBV6-5A0A0K0K1A5 114 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 GAGE12JA6NER3 117 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 SDHAF1A6NFY7 115 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 VCYO14598 125 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 CRYBA4P53673 196 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 Q0VG73 95 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 GAGE1Q13065 139 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 GAGE4Q13068 117 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 GAGE5Q13069 117 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 GAGE13Q4V321 117 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 Q6ZSN1 163 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 NRACQ8N912 160 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 NEXN-AS1Q8NBZ9 246 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 ZNRF2Q8NHG8 242 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 C18orf32Q8TCD1 76 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 KIR2DL4Q99706 377 aa10.02□□□□□ -0.81
SKA1-202ENST00000398452 TRAV26-1A0A087WT03 109 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 A0A0J9YY99 117 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 KRTAP9-6A0A140TA67 174 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 TCAPO15273 167 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 P0DMU3 169 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 FAM231AP0DMU4 169 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 FAM231CP0DMU5 169 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 GYPEP15421 78 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 HOXA5P20719 270 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 FCER1GP30273 86 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 IQCJQ1A5X6 159 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 RNASEKQ6P5S7 137 aaKnown RBP10.01□□□□□ -0.81
SKA1-202ENST00000398452 SMIM2Q9BVW6 85 aa10.01□□□□□ -0.81
SKA1-202ENST00000398452 GAS8-AS1O95177 125 aa10□□□□□ -0.81
SKA1-202ENST00000398452 SH2D6Q7Z4S9 175 aa10□□□□□ -0.81
SKA1-202ENST00000398452 DAZ4Q86SG3 579 aaKnown RBP10□□□□□ -0.81
SKA1-202ENST00000398452 DAZ3Q9NR90 486 aaKnown RBP10□□□□□ -0.81
SKA1-202ENST00000398452 ICOSQ9Y6W8 199 aa10□□□□□ -0.81
SKA1-202ENST00000398452 I3L3M4 83 aa9.99□□□□□ -0.81
SKA1-202ENST00000398452 HSBP1O75506 76 aa9.99□□□□□ -0.81
SKA1-202ENST00000398452 LINC00614P0C842 121 aa9.99□□□□□ -0.81
SKA1-202ENST00000398452 RPL32P62910 135 aaKnown RBP9.99□□□□□ -0.81
SKA1-202ENST00000398452 MRPL23Q16540 153 aaKnown RBP9.99□□□□□ -0.81
SKA1-202ENST00000398452 NIT1Q86X76 327 aa9.99□□□□□ -0.81
SKA1-202ENST00000398452 Q8N8P6 123 aa9.99□□□□□ -0.81
SKA1-202ENST00000398452 CHCHD1Q96BP2 118 aaKnown RBP9.99□□□□□ -0.81
SKA1-202ENST00000398452 TMEM70Q9BUB7 260 aa9.99□□□□□ -0.81
SKA1-202ENST00000398452 AP5S1Q9NUS5 200 aa9.99□□□□□ -0.81
SKA1-202ENST00000398452 PRSS47A8MTI9 375 aa9.98□□□□□ -0.81
SKA1-202ENST00000398452 K7EMI3 77 aa9.98□□□□□ -0.81
SKA1-202ENST00000398452 G0S2P27469 103 aa9.98□□□□□ -0.81
SKA1-202ENST00000398452 IFI27P40305 119 aaPredicted RBP9.98□□□□□ -0.81
SKA1-202ENST00000398452 COTL1Q14019 142 aa9.98□□□□□ -0.81
SKA1-202ENST00000398452 TMEM97Q5BJF2 176 aa9.98□□□□□ -0.81
SKA1-202ENST00000398452 PHLDA1Q8WV24 401 aaPredicted RBP9.98□□□□□ -0.81
SKA1-202ENST00000398452 H3BNG1 76 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms