RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CENPEQ02224 2701 aa9.4□□□□□ -0.9
SHMT1-205ENST00000395684 SPINK13Q1W4C9 94 aa9.4□□□□□ -0.9
SHMT1-205ENST00000395684 CSPG4Q6UVK1 2322 aa9.4□□□□□ -0.91
SHMT1-205ENST00000395684 NSUN5P1Q3KNT7 163 aa9.39□□□□□ -0.91
SHMT1-205ENST00000395684 C10orf126Q8N4M7 172 aa9.39□□□□□ -0.91
SHMT1-205ENST00000395684 SYT8Q8NBV8 401 aa9.39□□□□□ -0.91
SHMT1-205ENST00000395684 ODF3Q96PU9 254 aa9.39□□□□□ -0.91
SHMT1-205ENST00000395684 LGALS3P17931 250 aaKnown RBP9.39□□□□□ -0.91
SHMT1-205ENST00000395684 FHL3Q13643 280 aa9.39□□□□□ -0.91
SHMT1-205ENST00000395684 CDIP1Q9H305 208 aa9.39□□□□□ -0.91
SHMT1-205ENST00000395684 IGHV1OR15-1A0A075B7D0 117 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 TMEM223A0PJW6 202 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 EIF4EBP3O60516 100 aaPredicted RBP9.38□□□□□ -0.91
SHMT1-205ENST00000395684 ATP5J2P56134 94 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 ZNF462Q96JM2 2506 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 CSMD2Q7Z408 3487 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 IGHV3-64A0A075B6Q5 118 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 K7EQG2 157 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 TGFAP01135 160 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 RHOHQ15669 191 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 TRPT1Q86TN4 253 aaKnown RBP9.38□□□□□ -0.91
SHMT1-205ENST00000395684 C20orf203Q8NBC4 194 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 CARD19Q96LW7 228 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 PRO1854Q9UHT4 67 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 ZNF580Q9UK33 172 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 SORL1Q92673 2214 aa9.38□□□□□ -0.91
SHMT1-205ENST00000395684 SNRPD3P62318 126 aaKnown RBP9.38□□□□□ -0.91
SHMT1-205ENST00000395684 IGHV4-59P01825 116 aa9.37□□□□□ -0.91
SHMT1-205ENST00000395684 TRBV20-1A0A075B6N2 111 aa9.37□□□□□ -0.91
SHMT1-205ENST00000395684 A0A0J9YXV3 536 aa9.37□□□□□ -0.91
SHMT1-205ENST00000395684 A4D1N5 150 aa9.37□□□□□ -0.91
SHMT1-205ENST00000395684 LEPROTO15243 131 aa9.37□□□□□ -0.91
SHMT1-205ENST00000395684 ZNF22P17026 224 aaPredicted RBP9.37□□□□□ -0.91
SHMT1-205ENST00000395684 LYRM7Q5U5X0 104 aa9.37□□□□□ -0.91
SHMT1-205ENST00000395684 I3L3M4 83 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 RHODO00212 210 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 TEN1Q86WV5 123 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 SBSPONQ8IVN8 264 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 RAX2Q96IS3 184 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 IGLV4-3A0A075B6K6 122 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 SCGB1C2P0DMR2 95 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 SYNJ2BPP57105 145 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 DUX5Q96PT3 197 aa9.36□□□□□ -0.91
SHMT1-205ENST00000395684 DEFB112Q30KQ8 113 aa9.35□□□□□ -0.91
SHMT1-205ENST00000395684 PPDPFLQ8WWR9 84 aa9.35□□□□□ -0.91
SHMT1-205ENST00000395684 TRAV2A0A0B4J234 112 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 MUSTN1Q8IVN3 82 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 TMEM263Q8WUH6 116 aaKnown RBP9.34□□□□□ -0.91
SHMT1-205ENST00000395684 FAM104AQ969W3 186 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 VCX2Q9H322 139 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 PRORYQ9H606 182 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 DOPEY2Q9Y3R5 2298 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 B4DSR2 109 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 IGHV3-33P01772 117 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 RBMY1A1P0DJD3 496 aaKnown RBP9.34□□□□□ -0.91
SHMT1-205ENST00000395684 RBMY1CP0DJD4 496 aa9.34□□□□□ -0.91
SHMT1-205ENST00000395684 RBMY1FQ15415 496 aaKnown RBP9.34□□□□□ -0.91
SHMT1-205ENST00000395684 USP9XQ93008 2570 aaPredicted RBP9.33□□□□□ -0.92
SHMT1-205ENST00000395684 IGHV3-73A0A0B4J1V6 119 aa9.33□□□□□ -0.92
SHMT1-205ENST00000395684 A8MWV9 139 aa9.33□□□□□ -0.92
SHMT1-205ENST00000395684 PROK1P58294 105 aa9.33□□□□□ -0.92
SHMT1-205ENST00000395684 MT-ATP8P03928 68 aa9.33□□□□□ -0.92
SHMT1-205ENST00000395684 A0A1B0GV72 72 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 H7C2G1 150 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 HTN1P15515 57 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 XGP55808 180 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 ANKRD29Q8N6D5 301 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 SPXQ9BT56 116 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 CREBBPQ92793 2442 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 LRRK2Q5S007 2527 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 PRM2P04554 102 aa9.32□□□□□ -0.92
SHMT1-205ENST00000395684 CEMP1Q6PRD7 247 aaPredicted RBP9.32□□□□□ -0.92
SHMT1-205ENST00000395684 ADARB2-AS1A8MUL3 147 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 SPINK8P0C7L1 97 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 CRYBA4P53673 196 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 TCTEX1D4Q5JR98 221 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 Q6ZUT4 128 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 Q9UF83 564 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 A0A0J9YXY3 114 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 M0R2P5 195 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 ELANEP08246 267 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 IGHV3-30-3P0DP02 117 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 CKS1BP61024 79 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 RNF152Q8N8N0 203 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 NRGNQ92686 78 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 ERG28Q9UKR5 140 aa9.31□□□□□ -0.92
SHMT1-205ENST00000395684 TRGV11A0A075B6L2 103 aa9.3□□□□□ -0.92
SHMT1-205ENST00000395684 A0A0B4J2C4 111 aa9.3□□□□□ -0.92
SHMT1-205ENST00000395684 TMEM89A2RUT3 159 aa9.3□□□□□ -0.92
SHMT1-205ENST00000395684 KNCNA6PVL3 124 aa9.3□□□□□ -0.92
SHMT1-205ENST00000395684 SLC25A20O43772 301 aa9.3□□□□□ -0.92
SHMT1-205ENST00000395684 HOXD3P31249 432 aaPredicted RBP9.3□□□□□ -0.92
SHMT1-205ENST00000395684 RNASE13Q5GAN3 156 aaKnown RBP9.3□□□□□ -0.92
SHMT1-205ENST00000395684 ZANQ9Y493 2812 aa9.3□□□□□ -0.92
SHMT1-205ENST00000395684 TRAV8-3A0A0A6YYJ7 113 aa9.29□□□□□ -0.92
SHMT1-205ENST00000395684 C9JAW5 83 aa9.29□□□□□ -0.92
SHMT1-205ENST00000395684 CD28P10747 220 aa9.29□□□□□ -0.92
SHMT1-205ENST00000395684 CLUHP3Q96NS8 147 aa9.29□□□□□ -0.92
SHMT1-205ENST00000395684 PYGO1Q9Y3Y4 419 aa9.29□□□□□ -0.92
SHMT1-205ENST00000395684 FAM208BQ5VWN6 2430 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms