RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 FAM231AP0DMU4 169 aa13.72□□□□□ -0.21
CCDC3-201ENST00000378825 FAM231CP0DMU5 169 aa13.72□□□□□ -0.21
CCDC3-201ENST00000378825 PRORYQ9H606 182 aa13.72□□□□□ -0.21
CCDC3-201ENST00000378825 BEX4Q9NWD9 120 aaPredicted RBP13.72□□□□□ -0.21
CCDC3-201ENST00000378825 IGHV4-61A0A0C4DH41 118 aa13.71□□□□□ -0.21
CCDC3-201ENST00000378825 SLC25A20O43772 301 aa13.71□□□□□ -0.21
CCDC3-201ENST00000378825 PPP1R17O96001 155 aa13.71□□□□□ -0.21
CCDC3-201ENST00000378825 MUSTN1Q8IVN3 82 aa13.71□□□□□ -0.21
CCDC3-201ENST00000378825 TIMM17AQ99595 171 aa13.71□□□□□ -0.21
CCDC3-201ENST00000378825 POLQO75417 2590 aa13.71□□□□□ -0.21
CCDC3-201ENST00000378825 ZNF56Q15929 161 aa13.71□□□□□ -0.21
CCDC3-201ENST00000378825 A0A0J9YXV3 536 aa13.7□□□□□ -0.22
CCDC3-201ENST00000378825 IGHV3-33P01772 117 aa13.7□□□□□ -0.22
CCDC3-201ENST00000378825 PAPPA-AS1Q5QFB9 102 aa13.7□□□□□ -0.22
CCDC3-201ENST00000378825 TRBV20-1A0A075B6N2 111 aa13.7□□□□□ -0.22
CCDC3-201ENST00000378825 TMEM141Q96I45 108 aa13.7□□□□□ -0.22
CCDC3-201ENST00000378825 USP9YO00507 2555 aaPredicted RBP13.7□□□□□ -0.22
CCDC3-201ENST00000378825 TRBV27A0A0K0K1C4 114 aa13.7□□□□□ -0.22
CCDC3-201ENST00000378825 TMEM263Q8WUH6 116 aaKnown RBP13.7□□□□□ -0.22
CCDC3-201ENST00000378825 PRRC2AP48634 2157 aaKnown RBP13.69□□□□□ -0.22
CCDC3-201ENST00000378825 ACACBO00763 2458 aa13.69□□□□□ -0.22
CCDC3-201ENST00000378825 IGHV4-38-2P0DP08 117 aa13.69□□□□□ -0.22
CCDC3-201ENST00000378825 TMEM95Q3KNT9 176 aa13.69□□□□□ -0.22
CCDC3-201ENST00000378825 LYRM7Q5U5X0 104 aa13.69□□□□□ -0.22
CCDC3-201ENST00000378825 ZANQ9Y493 2812 aa13.69□□□□□ -0.22
CCDC3-201ENST00000378825 RNASE13Q5GAN3 156 aaKnown RBP13.69□□□□□ -0.22
CCDC3-201ENST00000378825 TMEM223A0PJW6 202 aa13.68□□□□□ -0.22
CCDC3-201ENST00000378825 ZNF22P17026 224 aaPredicted RBP13.68□□□□□ -0.22
CCDC3-201ENST00000378825 M0QY20 66 aa13.68□□□□□ -0.22
CCDC3-201ENST00000378825 CRLF1O75462 422 aa13.68□□□□□ -0.22
CCDC3-201ENST00000378825 Q6ZSV7 163 aa13.68□□□□□ -0.22
CCDC3-201ENST00000378825 CEMP1Q6PRD7 247 aaPredicted RBP13.67□□□□□ -0.22
CCDC3-201ENST00000378825 RPL32P62910 135 aaKnown RBP13.67□□□□□ -0.22
CCDC3-201ENST00000378825 Q8N1Y9 231 aa13.67□□□□□ -0.22
CCDC3-201ENST00000378825 NTN5Q8WTR8 489 aaPredicted RBP13.67□□□□□ -0.22
CCDC3-201ENST00000378825 LGALS9O00182 355 aa13.66□□□□□ -0.22
CCDC3-201ENST00000378825 Q1RN00 199 aa13.66□□□□□ -0.22
CCDC3-201ENST00000378825 DCANP1Q8TF63 244 aa13.66□□□□□ -0.22
CCDC3-201ENST00000378825 ERG28Q9UKR5 140 aa13.66□□□□□ -0.22
CCDC3-201ENST00000378825 IGHV3-16A0A0C4DH30 117 aa13.66□□□□□ -0.22
CCDC3-201ENST00000378825 H3BUX3 64 aa13.66□□□□□ -0.22
CCDC3-201ENST00000378825 DOPEY1Q5JWR5 2465 aa13.66□□□□□ -0.22
CCDC3-201ENST00000378825 IGHV3-73A0A0B4J1V6 119 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 A8MZ25 164 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 NPC2P61916 151 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 C10orf99Q6UWK7 81 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 SPXQ9BT56 116 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 DAZ1Q9NQZ3 744 aaKnown RBP13.65□□□□□ -0.22
CCDC3-201ENST00000378825 TRAV8-3A0A0A6YYJ7 113 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 TEX49A0A1B0GTD5 131 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 RHODO00212 210 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 IGHV1-69P01742 117 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 ANAPC13Q9BS18 74 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 Q9UF83 564 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 FAM208BQ5VWN6 2430 aa13.65□□□□□ -0.22
CCDC3-201ENST00000378825 PRM2P04554 102 aa13.64□□□□□ -0.23
CCDC3-201ENST00000378825 SPINK13Q1W4C9 94 aa13.64□□□□□ -0.23
CCDC3-201ENST00000378825 CCL19Q99731 98 aa13.64□□□□□ -0.23
CCDC3-201ENST00000378825 TRAV4A0A0B4J268 109 aa13.64□□□□□ -0.23
CCDC3-201ENST00000378825 LEPROTO15243 131 aa13.64□□□□□ -0.23
CCDC3-201ENST00000378825 PROK1P58294 105 aa13.64□□□□□ -0.23
CCDC3-201ENST00000378825 VCX2Q9H322 139 aa13.64□□□□□ -0.23
CCDC3-201ENST00000378825 NRGNQ92686 78 aa13.63□□□□□ -0.23
CCDC3-201ENST00000378825 SS18L2Q9UHA2 77 aa13.63□□□□□ -0.23
CCDC3-201ENST00000378825 IGLV4-3A0A075B6K6 122 aa13.63□□□□□ -0.23
CCDC3-201ENST00000378825 IGHV4-30-2A0A087WSY4 118 aa13.63□□□□□ -0.23
CCDC3-201ENST00000378825 NHLRC4P0CG21 123 aaPredicted RBP13.63□□□□□ -0.23
CCDC3-201ENST00000378825 C9orf85Q96MD7 179 aa13.63□□□□□ -0.23
CCDC3-201ENST00000378825 TRBV6-5A0A0K0K1A5 114 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 HTN1P15515 57 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 C20orf203Q8NBC4 194 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 CITED1Q99966 193 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 A0A0J9YXY3 114 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 IGHG2P01859 326 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 ZFAND6Q6FIF0 208 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 FAM104AQ969W3 186 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 PIMREGQ9BSJ6 248 aa13.62□□□□□ -0.23
CCDC3-201ENST00000378825 TRIAP1O43715 76 aa13.61□□□□□ -0.23
CCDC3-201ENST00000378825 PRSS2P07478 247 aa13.61□□□□□ -0.23
CCDC3-201ENST00000378825 ATP5J2P56134 94 aa13.61□□□□□ -0.23
CCDC3-201ENST00000378825 ADAMTSL4-AS1Q5T5F5 129 aa13.61□□□□□ -0.23
CCDC3-201ENST00000378825 NACAE9PAV3 2078 aa13.61□□□□□ -0.23
CCDC3-201ENST00000378825 TEX29Q8N6K0 151 aa13.61□□□□□ -0.23
CCDC3-201ENST00000378825 IGHV3-30-3P0DP02 117 aa13.6□□□□□ -0.23
CCDC3-201ENST00000378825 NSUN5P1Q3KNT7 163 aa13.6□□□□□ -0.23
CCDC3-201ENST00000378825 LINC01620Q4KN68 170 aa13.6□□□□□ -0.23
CCDC3-201ENST00000378825 USMG5Q96IX5 58 aa13.6□□□□□ -0.23
CCDC3-201ENST00000378825 TRBV7-9A0A0J9YWB2 115 aa13.6□□□□□ -0.23
CCDC3-201ENST00000378825 LRRK2Q5S007 2527 aa13.59□□□□□ -0.23
CCDC3-201ENST00000378825 A0A0B4J2C4 111 aa13.59□□□□□ -0.23
CCDC3-201ENST00000378825 M0R2P5 195 aa13.59□□□□□ -0.23
CCDC3-201ENST00000378825 C10orf105Q8TEF2 133 aa13.59□□□□□ -0.23
CCDC3-201ENST00000378825 LITAFQ99732 161 aa13.59□□□□□ -0.23
CCDC3-201ENST00000378825 B5MCH6 92 aa13.58□□□□□ -0.24
CCDC3-201ENST00000378825 DUX5Q96PT3 197 aa13.58□□□□□ -0.24
CCDC3-201ENST00000378825 KNCNA6PVL3 124 aa13.57□□□□□ -0.24
CCDC3-201ENST00000378825 AVPP01185 164 aa13.57□□□□□ -0.24
CCDC3-201ENST00000378825 ID1P41134 155 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 TMEM262E9PQX1 116 aa13.56□□□□□ -0.24
CCDC3-201ENST00000378825 IGLV1-40P01703 118 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms