RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ATP6V0E2Q8NHE4 81 aa10.5□□□□□ -0.73
CD48-201ENST00000368045 VCX2Q9H322 139 aa10.5□□□□□ -0.73
CD48-201ENST00000368045 A8MWV9 139 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 H3BMM0 161 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 RHODO00212 210 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 ZNF22P17026 224 aaPredicted RBP10.49□□□□□ -0.73
CD48-201ENST00000368045 DEFB104AQ8WTQ1 72 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 LINC00467Q9BRT7 94 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 PEMTQ9UBM1 199 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 TRBV20-1A0A075B6N2 111 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 DEFB131AP59861 70 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 ETDBQ3ZM63 59 aa10.49□□□□□ -0.73
CD48-201ENST00000368045 KNCNA6PVL3 124 aa10.48□□□□□ -0.73
CD48-201ENST00000368045 M0R2P5 195 aa10.48□□□□□ -0.73
CD48-201ENST00000368045 APOMO95445 188 aa10.48□□□□□ -0.73
CD48-201ENST00000368045 RBMY1A1P0DJD3 496 aaKnown RBP10.48□□□□□ -0.73
CD48-201ENST00000368045 RBMY1CP0DJD4 496 aa10.48□□□□□ -0.73
CD48-201ENST00000368045 ZNF415Q09FC8 603 aa10.48□□□□□ -0.73
CD48-201ENST00000368045 RBMY1FQ15415 496 aaKnown RBP10.48□□□□□ -0.73
CD48-201ENST00000368045 CFAP126Q5VTH2 177 aa10.48□□□□□ -0.73
CD48-201ENST00000368045 CFC1BP0CG36 223 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 CFC1P0CG37 223 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 SCGB1A1P11684 91 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 SH2D6Q7Z4S9 175 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 C10orf126Q8N4M7 172 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 OPRPNQ99935 248 aaPredicted RBP10.47□□□□□ -0.73
CD48-201ENST00000368045 LOC107984156A0A0G2JMH3 177 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 SLURP1P55000 103 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 ARL17AQ8IVW1 177 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 C4orf3Q8WVX3 66 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 SPATA25Q9BR10 227 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 BEX4Q9NWD9 120 aaPredicted RBP10.47□□□□□ -0.73
CD48-201ENST00000368045 PRO1854Q9UHT4 67 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 TNFRSF18Q9Y5U5 241 aa10.47□□□□□ -0.73
CD48-201ENST00000368045 MAPK1IP1LQ8NDC0 245 aa10.46□□□□□ -0.74
CD48-201ENST00000368045 DUX3Q96PT4 197 aa10.46□□□□□ -0.74
CD48-201ENST00000368045 SIGMAR1Q99720 223 aa10.46□□□□□ -0.74
CD48-201ENST00000368045 SPG11Q96JI7 2443 aa10.46□□□□□ -0.74
CD48-201ENST00000368045 A0A0J9YXV3 536 aa10.45□□□□□ -0.74
CD48-201ENST00000368045 TMEM238C9JI98 176 aa10.45□□□□□ -0.74
CD48-201ENST00000368045 CD28P10747 220 aa10.45□□□□□ -0.74
CD48-201ENST00000368045 PSMB2P49721 201 aa10.45□□□□□ -0.74
CD48-201ENST00000368045 MRPS36P82909 103 aaKnown RBP10.45□□□□□ -0.74
CD48-201ENST00000368045 SPXQ9BT56 116 aa10.45□□□□□ -0.74
CD48-201ENST00000368045 C1QTNF4Q9BXJ3 329 aa10.45□□□□□ -0.74
CD48-201ENST00000368045 SPANXA1Q9NS26 97 aa10.45□□□□□ -0.74
CD48-201ENST00000368045 TSSC4Q9Y5U2 329 aaPredicted RBP10.45□□□□□ -0.74
CD48-201ENST00000368045 A0A0B4J2C4 111 aa10.44□□□□□ -0.74
CD48-201ENST00000368045 RBMY1BA6NDE4 496 aaKnown RBP10.44□□□□□ -0.74
CD48-201ENST00000368045 GAGE12HA6NDE8 117 aa10.44□□□□□ -0.74
CD48-201ENST00000368045 RBMY1EA6NEQ0 496 aaKnown RBP10.44□□□□□ -0.74
CD48-201ENST00000368045 RBMY1DP0C7P1 496 aaKnown RBP10.44□□□□□ -0.74
CD48-201ENST00000368045 LRRC75A-AS1Q8N1F1 130 aa10.44□□□□□ -0.74
CD48-201ENST00000368045 DNAJC30Q96LL9 226 aa10.44□□□□□ -0.74
CD48-201ENST00000368045 RAX2Q96IS3 184 aa10.44□□□□□ -0.74
CD48-201ENST00000368045 CLUHP3Q96NS8 147 aa10.44□□□□□ -0.74
CD48-201ENST00000368045 CSPG4Q6UVK1 2322 aa10.43□□□□□ -0.74
CD48-201ENST00000368045 CFAP46Q8IYW2 2715 aa10.43□□□□□ -0.74
CD48-201ENST00000368045 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.43□□□□□ -0.74
CD48-201ENST00000368045 TMEM61Q8N0U2 210 aa10.43□□□□□ -0.74
CD48-201ENST00000368045 CACNA1AO00555 2505 aa10.43□□□□□ -0.74
CD48-201ENST00000368045 SMCPP49901 116 aaPredicted RBP10.42□□□□□ -0.74
CD48-201ENST00000368045 DEFB136Q30KP8 78 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 BEAN1Q3B7T3 259 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 SBSPONQ8IVN8 264 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 DYNLRB2Q8TF09 96 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 TIMM21Q9BVV7 248 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 MAP6D1Q9H9H5 199 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 TINCRA0A1B0GVN0 87 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 A4D1N5 150 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 INSP01308 110 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 HTN1P15515 57 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 FOXI1Q12951 378 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 C18orf65Q6ZTR6 163 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 MTURNQ8N3F0 131 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 TMEM86BQ8N661 226 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 FAM104AQ969W3 186 aa10.42□□□□□ -0.74
CD48-201ENST00000368045 USP9XQ93008 2570 aaPredicted RBP10.41□□□□□ -0.74
CD48-201ENST00000368045 PIEZO1Q92508 2521 aa10.41□□□□□ -0.74
CD48-201ENST00000368045 IGHV3-73A0A0B4J1V6 119 aa10.41□□□□□ -0.74
CD48-201ENST00000368045 IGHV3-53P01767 116 aa10.41□□□□□ -0.74
CD48-201ENST00000368045 IGHV3-30-3P0DP02 117 aa10.41□□□□□ -0.74
CD48-201ENST00000368045 DEFB113Q30KQ7 82 aa10.41□□□□□ -0.74
CD48-201ENST00000368045 C11orf72Q8NBR9 251 aa10.41□□□□□ -0.74
CD48-201ENST00000368045 A0A0J9YXY3 114 aa10.4□□□□□ -0.74
CD48-201ENST00000368045 M0QXV9 152 aa10.4□□□□□ -0.74
CD48-201ENST00000368045 TCL1BO95988 128 aa10.4□□□□□ -0.74
CD48-201ENST00000368045 IGHV3-33P01772 117 aa10.4□□□□□ -0.74
CD48-201ENST00000368045 AZU1P20160 251 aa10.4□□□□□ -0.74
CD48-201ENST00000368045 DEFB114Q30KQ6 69 aa10.4□□□□□ -0.74
CD48-201ENST00000368045 TMEM263Q8WUH6 116 aaKnown RBP10.4□□□□□ -0.74
CD48-201ENST00000368045 CHCHD7Q9BUK0 85 aa10.4□□□□□ -0.74
CD48-201ENST00000368045 IGHV1-58A0A0C4DH39 117 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 RS1O15537 224 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 PROK1P58294 105 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 MUSTN1Q8IVN3 82 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 LINC01587Q99440 93 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 ERG28Q9UKR5 140 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 UBE2D4Q9Y2X8 147 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 TRAV25A0A0B4J276 109 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms