RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 A0A0J9YX75 114 aa9.74□□□□□ -0.85
SQSTM1-201ENST00000360718 DEFB131AP59861 70 aa9.74□□□□□ -0.85
SQSTM1-201ENST00000360718 PRR9Q5T870 116 aa9.74□□□□□ -0.85
SQSTM1-201ENST00000360718 TRRAPQ9Y4A5 3859 aa9.74□□□□□ -0.85
SQSTM1-201ENST00000360718 G3V4G9 280 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 M0R381 172 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 SUMO2P61956 95 aaKnown RBP9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 SAMD5Q5TGI4 173 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 LINC00482Q8N8I6 264 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 TM2D2Q9BX73 214 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 Q6ZQT7 251 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 CEND1Q8N111 149 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 SCGB3A1Q96QR1 104 aa9.73□□□□□ -0.85
SQSTM1-201ENST00000360718 NOTCH3Q9UM47 2321 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 F8VRH5 84 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 J3KRW8 73 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 IGLV1-51P01701 117 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 TOMM6Q96B49 74 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 ODF3Q96PU9 254 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 CIDEAO60543 219 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 FXYD2P54710 66 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 CMC4P56277 68 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 NEGR1Q7Z3B1 354 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 FAM19A4Q96LR4 140 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 NAA38Q9BRA0 125 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 MAP6D1Q9H9H5 199 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 ZNF256Q9Y2P7 627 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 COL6A5A8TX70 2615 aa9.72□□□□□ -0.85
SQSTM1-201ENST00000360718 RNASE4P34096 147 aaKnown RBP9.71□□□□□ -0.85
SQSTM1-201ENST00000360718 ANXA2RQ3ZCQ2 193 aa9.71□□□□□ -0.85
SQSTM1-201ENST00000360718 APRG1Q8IVJ8 170 aa9.71□□□□□ -0.85
SQSTM1-201ENST00000360718 TTTY13Q9BZ97 58 aa9.71□□□□□ -0.85
SQSTM1-201ENST00000360718 IGKV3-20P01619 116 aa9.71□□□□□ -0.86
SQSTM1-201ENST00000360718 RASL10AQ92737 203 aa9.71□□□□□ -0.86
SQSTM1-201ENST00000360718 LINC01549A6NIU2 74 aa9.7□□□□□ -0.86
SQSTM1-201ENST00000360718 C14orf178Q8N769 122 aaPredicted RBP9.7□□□□□ -0.86
SQSTM1-201ENST00000360718 OR11H12B2RN74 326 aa9.7□□□□□ -0.86
SQSTM1-201ENST00000360718 MGPP08493 103 aa9.7□□□□□ -0.86
SQSTM1-201ENST00000360718 INSL3P51460 131 aa9.7□□□□□ -0.86
SQSTM1-201ENST00000360718 KNCNA6PVL3 124 aa9.69□□□□□ -0.86
SQSTM1-201ENST00000360718 C3orf56Q8N813 242 aa9.69□□□□□ -0.86
SQSTM1-201ENST00000360718 NHP2Q9NX24 153 aaKnown RBP9.69□□□□□ -0.86
SQSTM1-201ENST00000360718 KLLNB2CW77 178 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 TMEM238C9JI98 176 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 C9orf66Q5T8R8 295 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 MAPKAPK5-AS1Q8N8E1 139 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 NEXN-AS1Q8NBZ9 246 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 OR11H2Q8NH07 326 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 H3BMM0 161 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 C2orf66Q6UXQ4 117 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 HIST1H4GQ99525 98 aa9.68□□□□□ -0.86
SQSTM1-201ENST00000360718 GNRH2O43555 120 aa9.67□□□□□ -0.86
SQSTM1-201ENST00000360718 ODF3L2Q3SX64 289 aa9.67□□□□□ -0.86
SQSTM1-201ENST00000360718 POM121L12Q8N7R1 296 aa9.67□□□□□ -0.86
SQSTM1-201ENST00000360718 RPL39LQ96EH5 51 aaKnown RBP9.67□□□□□ -0.86
SQSTM1-201ENST00000360718 MYMXA0A1B0GTQ4 84 aa9.67□□□□□ -0.86
SQSTM1-201ENST00000360718 FAM159AQ6UWV7 190 aa9.67□□□□□ -0.86
SQSTM1-201ENST00000360718 PHLDA1Q8WV24 401 aaPredicted RBP9.67□□□□□ -0.86
SQSTM1-201ENST00000360718 RNASE3P12724 160 aaKnown RBP9.66□□□□□ -0.86
SQSTM1-201ENST00000360718 RPL32P62910 135 aaKnown RBP9.66□□□□□ -0.86
SQSTM1-201ENST00000360718 SPINK13Q1W4C9 94 aa9.66□□□□□ -0.86
SQSTM1-201ENST00000360718 STHQ8IWL8 128 aa9.66□□□□□ -0.86
SQSTM1-201ENST00000360718 NXPH4O95158 308 aa9.66□□□□□ -0.86
SQSTM1-201ENST00000360718 BEAN1Q3B7T3 259 aa9.66□□□□□ -0.86
SQSTM1-201ENST00000360718 FAM110AQ9BQ89 295 aa9.66□□□□□ -0.86
SQSTM1-201ENST00000360718 TRAV12-3A0A0B4J271 114 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 A8MTW9 85 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 E9PLD3 99 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 C12orf74Q32Q52 190 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 PAPPA-AS1Q5QFB9 102 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 SHISA2Q6UWI4 295 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 AMTNQ6UX39 209 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 BAALCQ8WXS3 180 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 CYSLTR1Q9Y271 337 aa9.65□□□□□ -0.86
SQSTM1-201ENST00000360718 IGLL5B9A064 214 aa9.65□□□□□ -0.87
SQSTM1-201ENST00000360718 K7ERJ3 54 aa9.65□□□□□ -0.87
SQSTM1-201ENST00000360718 RIPPLY3P57055 190 aa9.65□□□□□ -0.87
SQSTM1-201ENST00000360718 CLUHP3Q96NS8 147 aa9.65□□□□□ -0.87
SQSTM1-201ENST00000360718 PKD1L1Q8TDX9 2849 aa9.64□□□□□ -0.87
SQSTM1-201ENST00000360718 TRAV12-2A0A075B6T6 113 aa9.64□□□□□ -0.87
SQSTM1-201ENST00000360718 PRSS29PA6NIE9 313 aa9.64□□□□□ -0.87
SQSTM1-201ENST00000360718 SPRY2O43597 315 aa9.64□□□□□ -0.87
SQSTM1-201ENST00000360718 ZNF479Q96JC4 524 aa9.63□□□□□ -0.87
SQSTM1-201ENST00000360718 VCYO14598 125 aa9.63□□□□□ -0.87
SQSTM1-201ENST00000360718 CD7P09564 240 aa9.63□□□□□ -0.87
SQSTM1-201ENST00000360718 KIF25-AS1Q9Y6Z4 181 aa9.63□□□□□ -0.87
SQSTM1-201ENST00000360718 TRBV7-3A0A075B6L6 115 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 RBMY1BA6NDE4 496 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 RBMY1EA6NEQ0 496 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 F8W1H4 67 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 RBMY1DP0C7P1 496 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 SCGB1A1P11684 91 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 WFDC9Q8NEX5 89 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 KIR2DL4Q99706 377 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 HERVK_113P61574 105 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 TMEM141Q96I45 108 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 WFDC10AQ9H1F0 79 aa9.62□□□□□ -0.87
SQSTM1-201ENST00000360718 A6NJY4 79 aa9.61□□□□□ -0.87
SQSTM1-201ENST00000360718 LINC00315P59091 139 aa9.61□□□□□ -0.87
SQSTM1-201ENST00000360718 RPL24P83731 157 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 236.6 ms