RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PCNX3Q9H6A9 2034 aa14.95□□□□□ -0.02
CCDC88B-202ENST00000356786 MAPKAPK5-AS1Q8N8E1 139 aa14.95□□□□□ -0.02
CCDC88B-202ENST00000356786 NCKAP5O14513 1909 aa14.95□□□□□ -0.02
CCDC88B-202ENST00000356786 SPRY4Q9C004 299 aa14.94□□□□□ -0.02
CCDC88B-202ENST00000356786 Q6ZQT7 251 aa14.94□□□□□ -0.02
CCDC88B-202ENST00000356786 ADAMTS9Q9P2N4 1935 aa14.94□□□□□ -0.02
CCDC88B-202ENST00000356786 TMEM61Q8N0U2 210 aa14.94□□□□□ -0.02
CCDC88B-202ENST00000356786 ALPK3Q96L96 1907 aa14.93□□□□□ -0.02
CCDC88B-202ENST00000356786 DEFB105AQ8NG35 78 aa14.93□□□□□ -0.02
CCDC88B-202ENST00000356786 DEFB112Q30KQ8 113 aa14.93□□□□□ -0.02
CCDC88B-202ENST00000356786 Q9HAA7 133 aa14.93□□□□□ -0.02
CCDC88B-202ENST00000356786 A0A0J9YY99 117 aa14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 JMJD7-PLA2G4BH0Y9G9 81 aa14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 MDFICQ9P1T7 246 aa14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 IGFL2Q6UWQ7 119 aa14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 C1orf229Q6ZS94 237 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 C2orf91Q6ZV80 131 aa14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 CUL9Q8IWT3 2517 aa14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 MYO9AB2RTY4 2548 aa14.92□□□□□ -0.02
CCDC88B-202ENST00000356786 DAZ2Q13117 558 aaKnown RBP14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 DAZ4Q86SG3 579 aaKnown RBP14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 DAZ3Q9NR90 486 aaKnown RBP14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 CEMP1Q6PRD7 247 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 MIR7-3HGQ8N6C7 128 aa14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 WDR87Q6ZQQ6 2873 aa14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 IGLV10-54A0A075B6I4 117 aa14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 EIF4EBP1Q13541 118 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-202ENST00000356786 A0A0J9YXY3 114 aa14.9□□□□□ -0.02
CCDC88B-202ENST00000356786 K7EQD1 137 aa14.9□□□□□ -0.02
CCDC88B-202ENST00000356786 Q8N7P7 452 aa14.9□□□□□ -0.02
CCDC88B-202ENST00000356786 OTOGLQ3ZCN5 2332 aa14.9□□□□□ -0.02
CCDC88B-202ENST00000356786 MIAQ16674 131 aa14.9□□□□□ -0.02
CCDC88B-202ENST00000356786 C5orf56Q8N8D9 126 aa14.9□□□□□ -0.02
CCDC88B-202ENST00000356786 TRBV7-3A0A075B6L6 115 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 ATP5G1P05496 136 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 SLURP1P55000 103 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 SEM1Q6ZVN7 128 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 NEXN-AS1Q8NBZ9 246 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 C5orf47Q569G3 176 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 C14orf132Q9NPU4 83 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 UNQ9165/PRO28630Q6UXU0 137 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 RNF152Q8N8N0 203 aa14.89□□□□□ -0.03
CCDC88B-202ENST00000356786 J3QLI3 93 aa14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 FUSP35637 526 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 NFE4Q86UQ8 179 aa14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 CENPFP49454 3210 aa14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 MUC22E2RYF6 1773 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 PRB2P02812 416 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 WISP2O76076 250 aa14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 IGHV4-38-2P0DP08 117 aa14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 VPREB3Q9UKI3 123 aa14.88□□□□□ -0.03
CCDC88B-202ENST00000356786 PTPRSQ13332 1948 aa14.87□□□□□ -0.03
CCDC88B-202ENST00000356786 CRIP1P50238 77 aa14.87□□□□□ -0.03
CCDC88B-202ENST00000356786 IGHV4-28A0A0C4DH34 117 aa14.87□□□□□ -0.03
CCDC88B-202ENST00000356786 TMEM131Q92545 1883 aa14.87□□□□□ -0.03
CCDC88B-202ENST00000356786 NDUFC2O95298 119 aa14.87□□□□□ -0.03
CCDC88B-202ENST00000356786 UQCRQO14949 82 aa14.86□□□□□ -0.03
CCDC88B-202ENST00000356786 LINC00310P59036 64 aa14.86□□□□□ -0.03
CCDC88B-202ENST00000356786 DEFB121Q5J5C9 76 aa14.86□□□□□ -0.03
CCDC88B-202ENST00000356786 IGF2-ASQ6U949 168 aa14.86□□□□□ -0.03
CCDC88B-202ENST00000356786 IGHV4-61A0A0C4DH41 118 aa14.86□□□□□ -0.03
CCDC88B-202ENST00000356786 COX7A2LO14548 114 aa14.86□□□□□ -0.03
CCDC88B-202ENST00000356786 NREPQ16612 68 aa14.86□□□□□ -0.03
CCDC88B-202ENST00000356786 GYPEP15421 78 aa14.85□□□□□ -0.03
CCDC88B-202ENST00000356786 LINC00574Q9H8X3 128 aa14.85□□□□□ -0.03
CCDC88B-202ENST00000356786 K7EMT4 169 aa14.84□□□□□ -0.03
CCDC88B-202ENST00000356786 APOC4P55056 127 aa14.83□□□□□ -0.03
CCDC88B-202ENST00000356786 SP5Q6BEB4 398 aaPredicted RBP14.83□□□□□ -0.03
CCDC88B-202ENST00000356786 Q96MF0 132 aa14.83□□□□□ -0.04
CCDC88B-202ENST00000356786 TRAV23DV6A0A075B6W5 121 aa14.83□□□□□ -0.04
CCDC88B-202ENST00000356786 MYCNOSP40205 109 aa14.83□□□□□ -0.04
CCDC88B-202ENST00000356786 TRBV12-3P01733 135 aa14.83□□□□□ -0.04
CCDC88B-202ENST00000356786 CCL24O00175 119 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 ZFP36P26651 326 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 DNAH12Q6ZR08 3092 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 HIST2H2BDQ6DRA6 164 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 C20orf197Q8N268 126 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 A0A0J9YX75 114 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 TANC2Q9HCD6 1990 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 IGHV3-33P01772 117 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 CAMK2N2Q96S95 79 aa14.81□□□□□ -0.04
CCDC88B-202ENST00000356786 IGKV2D-24A0A075B6R9 120 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 SDIM1Q6ZPB5 146 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 U3KQK5 164 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 TRIAP1O43715 76 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 GPHB5Q86YW7 130 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 TMEM256-PLSCR3K7ERE1 68 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 RNF185Q96GF1 192 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 IGHV4OR15-8A0A075B7B6 117 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 A0A087WW49 117 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 ZNF22P17026 224 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 INSL3P51460 131 aa14.8□□□□□ -0.04
CCDC88B-202ENST00000356786 DOPEY1Q5JWR5 2465 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 CCDC140Q96MF4 163 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 C10orf142B7Z368 130 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 P0DMU3 169 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 FAM231AP0DMU4 169 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 FAM231CP0DMU5 169 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 C16orf74Q96GX8 76 aa14.79□□□□□ -0.04
CCDC88B-202ENST00000356786 TNRC6BQ9UPQ9 1833 aaKnown RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms