RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 COLQQ9Y215 455 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-202ENST00000347401 TIMM17BO60830 172 aa10.36□□□□□ -0.75
COL6A3-202ENST00000347401 COL8A2P25067 703 aa10.36□□□□□ -0.75
COL6A3-202ENST00000347401 TIRAPP58753 221 aa10.36□□□□□ -0.75
COL6A3-202ENST00000347401 IGLV11-55A0A075B6I3 123 aa10.35□□□□□ -0.75
COL6A3-202ENST00000347401 FANCD2OSQ96PS1 177 aa10.35□□□□□ -0.75
COL6A3-202ENST00000347401 WDR86Q86TI4 376 aa10.35□□□□□ -0.75
COL6A3-202ENST00000347401 CAMK2N2Q96S95 79 aa10.35□□□□□ -0.75
COL6A3-202ENST00000347401 WIPF3A6NGB9 483 aa10.35□□□□□ -0.75
COL6A3-202ENST00000347401 H0Y9J4 135 aa10.35□□□□□ -0.75
COL6A3-202ENST00000347401 BPY2O14599 106 aa10.35□□□□□ -0.75
COL6A3-202ENST00000347401 CFHR3Q02985 330 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 A0A1B0GXF2 115 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 TCL1BO95988 128 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 PTH2Q96A98 100 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 SPRY4Q9C004 299 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 LRRC75A-AS1Q8N1F1 130 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 RNF183Q96D59 192 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 CDPF1Q6NVV7 123 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 TRBV30A0A0K0K1B3 111 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 I3L2K1 104 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 LECT2O14960 151 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 SEM1Q6ZVN7 128 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 C3orf56Q8N813 242 aa10.34□□□□□ -0.75
COL6A3-202ENST00000347401 IGKV2D-24A0A075B6R9 120 aa10.33□□□□□ -0.76
COL6A3-202ENST00000347401 C14orf177Q52M58 125 aa10.33□□□□□ -0.76
COL6A3-202ENST00000347401 RPL39LQ96EH5 51 aaKnown RBP10.33□□□□□ -0.76
COL6A3-202ENST00000347401 TP73-AS1Q9UF72 201 aa10.33□□□□□ -0.76
COL6A3-202ENST00000347401 NOP10Q9NPE3 64 aaKnown RBP10.33□□□□□ -0.76
COL6A3-202ENST00000347401 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-202ENST00000347401 IGKV2-29A2NJV5 120 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-202ENST00000347401 C19orf71A6NCJ1 209 aa10.33□□□□□ -0.76
COL6A3-202ENST00000347401 C2orf70A6NJV1 201 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 VPREB1P12018 145 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 Q6ZR03 302 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 TRAV23DV6A0A075B6W5 121 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 IGHV3-38A0A0C4DH36 116 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 C1orf195Q5TG92 126 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 G3V318 75 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 FAM110AQ9BQ89 295 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 K7EIM0 57 aa10.32□□□□□ -0.76
COL6A3-202ENST00000347401 CLPSL2Q6UWE3 100 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 HOXB4P17483 251 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-202ENST00000347401 SETD2Q9BYW2 2564 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-202ENST00000347401 WI2-2373I1.2A0A1W2PRP0 233 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 SPART-AS1P0CW21 52 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 PRR31Q5SQ13 230 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 GPHB5Q86YW7 130 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 IGKV1-17P01599 117 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 GNLYP22749 145 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 IGHV3-30-3P0DP02 117 aa10.31□□□□□ -0.76
COL6A3-202ENST00000347401 TMEM263Q8WUH6 116 aaKnown RBP10.3□□□□□ -0.76
COL6A3-202ENST00000347401 GNRH2O43555 120 aa10.3□□□□□ -0.76
COL6A3-202ENST00000347401 DAND5Q8N907 189 aa10.3□□□□□ -0.76
COL6A3-202ENST00000347401 COX7BP24311 80 aa10.3□□□□□ -0.76
COL6A3-202ENST00000347401 FLG2Q5D862 2391 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-202ENST00000347401 RSPO1Q2MKA7 263 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-202ENST00000347401 C17orf77Q96MU5 243 aa10.3□□□□□ -0.76
COL6A3-202ENST00000347401 PRR30Q53SZ7 412 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-202ENST00000347401 FAM222AQ5U5X8 452 aa10.3□□□□□ -0.76
COL6A3-202ENST00000347401 UNQ6494/PRO21346Q6UXR6 183 aa10.3□□□□□ -0.76
COL6A3-202ENST00000347401 IGHV4-4A0A075B6R2 117 aa10.29□□□□□ -0.76
COL6A3-202ENST00000347401 UFSP1Q6NVU6 142 aa10.29□□□□□ -0.76
COL6A3-202ENST00000347401 GYPEP15421 78 aa10.29□□□□□ -0.76
COL6A3-202ENST00000347401 BLCAPP62952 87 aa10.29□□□□□ -0.76
COL6A3-202ENST00000347401 SERP1Q9Y6X1 66 aa10.29□□□□□ -0.76
COL6A3-202ENST00000347401 C9orf66Q5T8R8 295 aa10.28□□□□□ -0.76
COL6A3-202ENST00000347401 A0A0J9YXV3 536 aa10.28□□□□□ -0.76
COL6A3-202ENST00000347401 TEX49A0A1B0GTD5 131 aa10.28□□□□□ -0.76
COL6A3-202ENST00000347401 IBA57-AS1B1ANH7 110 aa10.28□□□□□ -0.76
COL6A3-202ENST00000347401 IGLC6P0CF74 106 aa10.28□□□□□ -0.76
COL6A3-202ENST00000347401 C20orf203Q8NBC4 194 aa10.28□□□□□ -0.76
COL6A3-202ENST00000347401 CCL24O00175 119 aa10.27□□□□□ -0.76
COL6A3-202ENST00000347401 RNASE13Q5GAN3 156 aaKnown RBP10.27□□□□□ -0.76
COL6A3-202ENST00000347401 TPSG1Q9NRR2 321 aa10.27□□□□□ -0.76
COL6A3-202ENST00000347401 CCL18P55774 89 aa10.27□□□□□ -0.77
COL6A3-202ENST00000347401 RETNQ9HD89 108 aa10.27□□□□□ -0.77
COL6A3-202ENST00000347401 PIEZO2Q9H5I5 2752 aa10.27□□□□□ -0.77
COL6A3-202ENST00000347401 COX7CP15954 63 aa10.27□□□□□ -0.77
COL6A3-202ENST00000347401 FAM19A3Q7Z5A8 133 aa10.27□□□□□ -0.77
COL6A3-202ENST00000347401 HHLA3Q9XRX5 114 aa10.27□□□□□ -0.77
COL6A3-202ENST00000347401 PIEZO1Q92508 2521 aa10.27□□□□□ -0.77
COL6A3-202ENST00000347401 CTSGP08311 255 aa10.26□□□□□ -0.77
COL6A3-202ENST00000347401 CLEC2BQ92478 149 aa10.26□□□□□ -0.77
COL6A3-202ENST00000347401 WISP1O95388 367 aa10.26□□□□□ -0.77
COL6A3-202ENST00000347401 C5orf38Q86SI9 138 aa10.26□□□□□ -0.77
COL6A3-202ENST00000347401 ZNF462Q96JM2 2506 aa10.26□□□□□ -0.77
COL6A3-202ENST00000347401 NUPR1O60356 82 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 MIR7-3HGQ8N6C7 128 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 ZFHX2Q9C0A1 2572 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-202ENST00000347401 B9D2Q9BPU9 175 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 MT-ATP8P03928 68 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 ABCA12Q86UK0 2595 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 C5orf24Q7Z6I8 188 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 U3KQK5 164 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 IGKV1OR2-108A0A075B7D4 117 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 C20orf197Q8N268 126 aa10.25□□□□□ -0.77
COL6A3-202ENST00000347401 PKD1L2Q7Z442 2459 aa10.24□□□□□ -0.77
COL6A3-202ENST00000347401 COX17Q14061 63 aa10.24□□□□□ -0.77
COL6A3-202ENST00000347401 INSL3P51460 131 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms